{"title":"Thermal signatures of biomolecules: an effective tool for screening biological defects","authors":"Sourav Kundu","doi":"10.1140/epje/s10189-025-00520-4","DOIUrl":null,"url":null,"abstract":"<p>We investigate the impact of environmental factors and biological defects on the thermal properties of single-helical proteins by analyzing their electronic specific heat (ESH) at constant volume (<span>\\(C_v\\)</span>). To accurately model these biomolecules, we consider their helical structure and long-range electron hopping within a tight-binding framework. Our findings demonstrate that the ESH spectra can differentiate between defective and pure helical protein molecules, even a sample with a very low contamination (single site defect) level. By comparing the ESH spectra of perfect and defective proteins, we can identify the relative location of the defect and distinguish them based on the level of contamination. This approach could be valuable for medical diagnosis of biological defects and serve as a preliminary screening method before resorting to whole genome sequencing, thereby saving time and resources.</p><p>Schematic view of a single helical protein molecule. The solid black dots along the helix (green curve) represent the amino acid residues. The dotted black lines between adjacent residues indicate the respective hopping amplitudes (t1 - t6)</p>","PeriodicalId":790,"journal":{"name":"The European Physical Journal E","volume":"48 10-12","pages":""},"PeriodicalIF":2.2000,"publicationDate":"2025-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"The European Physical Journal E","FirstCategoryId":"4","ListUrlMain":"https://link.springer.com/article/10.1140/epje/s10189-025-00520-4","RegionNum":4,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
We investigate the impact of environmental factors and biological defects on the thermal properties of single-helical proteins by analyzing their electronic specific heat (ESH) at constant volume (\(C_v\)). To accurately model these biomolecules, we consider their helical structure and long-range electron hopping within a tight-binding framework. Our findings demonstrate that the ESH spectra can differentiate between defective and pure helical protein molecules, even a sample with a very low contamination (single site defect) level. By comparing the ESH spectra of perfect and defective proteins, we can identify the relative location of the defect and distinguish them based on the level of contamination. This approach could be valuable for medical diagnosis of biological defects and serve as a preliminary screening method before resorting to whole genome sequencing, thereby saving time and resources.
Schematic view of a single helical protein molecule. The solid black dots along the helix (green curve) represent the amino acid residues. The dotted black lines between adjacent residues indicate the respective hopping amplitudes (t1 - t6)
期刊介绍:
EPJ E publishes papers describing advances in the understanding of physical aspects of Soft, Liquid and Living Systems.
Soft matter is a generic term for a large group of condensed, often heterogeneous systems -- often also called complex fluids -- that display a large response to weak external perturbations and that possess properties governed by slow internal dynamics.
Flowing matter refers to all systems that can actually flow, from simple to multiphase liquids, from foams to granular matter.
Living matter concerns the new physics that emerges from novel insights into the properties and behaviours of living systems. Furthermore, it aims at developing new concepts and quantitative approaches for the study of biological phenomena. Approaches from soft matter physics and statistical physics play a key role in this research.
The journal includes reports of experimental, computational and theoretical studies and appeals to the broad interdisciplinary communities including physics, chemistry, biology, mathematics and materials science.