Thermal signatures of biomolecules: an effective tool for screening biological defects

IF 2.2 4区 物理与天体物理 Q4 CHEMISTRY, PHYSICAL
Sourav Kundu
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Abstract

We investigate the impact of environmental factors and biological defects on the thermal properties of single-helical proteins by analyzing their electronic specific heat (ESH) at constant volume (\(C_v\)). To accurately model these biomolecules, we consider their helical structure and long-range electron hopping within a tight-binding framework. Our findings demonstrate that the ESH spectra can differentiate between defective and pure helical protein molecules, even a sample with a very low contamination (single site defect) level. By comparing the ESH spectra of perfect and defective proteins, we can identify the relative location of the defect and distinguish them based on the level of contamination. This approach could be valuable for medical diagnosis of biological defects and serve as a preliminary screening method before resorting to whole genome sequencing, thereby saving time and resources.

Schematic view of a single helical protein molecule. The solid black dots along the helix (green curve) represent the amino acid residues. The dotted black lines between adjacent residues indicate the respective hopping amplitudes (t1 - t6)

Abstract Image

生物分子的热特征:筛选生物缺陷的有效工具
我们通过分析单螺旋蛋白的等体积电子比热(ESH)来研究环境因素和生物缺陷对其热性能的影响(\(C_v\))。为了准确地模拟这些生物分子,我们在紧密结合的框架内考虑它们的螺旋结构和远程电子跳变。我们的研究结果表明,ESH光谱可以区分有缺陷和纯螺旋蛋白分子,即使是污染水平非常低的样品(单位点缺陷)。通过比较完美蛋白和缺陷蛋白的ESH光谱,我们可以识别缺陷的相对位置,并根据污染程度来区分它们。该方法可用于生物缺陷的医学诊断,并可作为全基因组测序前的初步筛选方法,从而节省时间和资源。单个螺旋蛋白分子的示意图。螺旋上的实心黑点(绿色曲线)代表氨基酸残基。相邻残基之间的黑色虚线表示各自的跳变幅度(t1 - t6)。
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来源期刊
The European Physical Journal E
The European Physical Journal E CHEMISTRY, PHYSICAL-MATERIALS SCIENCE, MULTIDISCIPLINARY
CiteScore
2.60
自引率
5.60%
发文量
92
审稿时长
3 months
期刊介绍: EPJ E publishes papers describing advances in the understanding of physical aspects of Soft, Liquid and Living Systems. Soft matter is a generic term for a large group of condensed, often heterogeneous systems -- often also called complex fluids -- that display a large response to weak external perturbations and that possess properties governed by slow internal dynamics. Flowing matter refers to all systems that can actually flow, from simple to multiphase liquids, from foams to granular matter. Living matter concerns the new physics that emerges from novel insights into the properties and behaviours of living systems. Furthermore, it aims at developing new concepts and quantitative approaches for the study of biological phenomena. Approaches from soft matter physics and statistical physics play a key role in this research. The journal includes reports of experimental, computational and theoretical studies and appeals to the broad interdisciplinary communities including physics, chemistry, biology, mathematics and materials science.
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