A Neural-Operator Surrogate for Platelet Deformation Across Capillary Numbers.

IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL
Marco Laudato
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引用次数: 0

Abstract

Reliable multiscale models of thrombosis require platelet-scale fidelity at organ-scale cost, a gap that scientific machine learning has the potential to narrow. We trained a DeepONet surrogate on platelet dynamics generated with LAMMPS for platelets spanning ten elastic moduli and capillary numbers (0.07-0.77). The network takes as input the wall shear stress, bond stiffness, time, and initial particle coordinates and returns the full three-dimensional deformation of the membrane. Mean-squared-error minimization with Adam and adaptive learning-rate decay yields a median displacement error below 1%, a 90th percentile below 3%, and a worst case below 4% over the entire calibrated range while accelerating computation by four to five orders of magnitude. Leave-extremes-out retraining shows acceptable extrapolation: the held-out stiffest and most compliant platelets retain sub-3% median error and an 8% maximum. Error peaks coincide with transient membrane self-contact, suggesting improvements via graph neural trunks and physics-informed torque regularization. These results represent a first demonstration of how the surrogate has the potential for coupling with continuum CFD, enabling future platelet-resolved hemodynamic simulations in patient-specific geometries and opening new avenues for predictive thrombosis modeling.

跨毛细血管数血小板变形的神经算子替代。
可靠的多尺度血栓模型需要血小板尺度的保真度和器官尺度的成本,科学机器学习有可能缩小这一差距。我们训练了一个DeepONet代理,用LAMMPS生成血小板动力学,用于跨越10个弹性模量和毛细血管数(0.07-0.77)的血小板。该网络以壁面剪切应力、粘结刚度、时间和初始粒子坐标为输入,返回膜的完整三维变形。使用Adam和自适应学习率衰减进行均方误差最小化,在整个校准范围内,中位位移误差低于1%,第90个百分点低于3%,最坏情况下低于4%,同时将计算速度提高了4到5个数量级。排除极端情况的再训练显示出可接受的外推:最硬和最柔顺的血小板保持在3%以下的中位误差和8%以下的最大值。误差峰值与瞬态膜自接触一致,表明可以通过图神经主干和物理信息扭矩正则化进行改进。这些结果首次证明了该替代物与连续流体动力学(CFD)耦合的潜力,从而实现了未来针对患者特定几何形状的血小板解析血流动力学模拟,并为预测血栓形成建模开辟了新的途径。
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来源期刊
Bioengineering
Bioengineering Chemical Engineering-Bioengineering
CiteScore
4.00
自引率
8.70%
发文量
661
期刊介绍: Aims Bioengineering (ISSN 2306-5354) provides an advanced forum for the science and technology of bioengineering. It publishes original research papers, comprehensive reviews, communications and case reports. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. All aspects of bioengineering are welcomed from theoretical concepts to education and applications. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. There are, in addition, four key features of this Journal: ● We are introducing a new concept in scientific and technical publications “The Translational Case Report in Bioengineering”. It is a descriptive explanatory analysis of a transformative or translational event. Understanding that the goal of bioengineering scholarship is to advance towards a transformative or clinical solution to an identified transformative/clinical need, the translational case report is used to explore causation in order to find underlying principles that may guide other similar transformative/translational undertakings. ● Manuscripts regarding research proposals and research ideas will be particularly welcomed. ● Electronic files and software regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material. ● We also accept manuscripts communicating to a broader audience with regard to research projects financed with public funds. Scope ● Bionics and biological cybernetics: implantology; bio–abio interfaces ● Bioelectronics: wearable electronics; implantable electronics; “more than Moore” electronics; bioelectronics devices ● Bioprocess and biosystems engineering and applications: bioprocess design; biocatalysis; bioseparation and bioreactors; bioinformatics; bioenergy; etc. ● Biomolecular, cellular and tissue engineering and applications: tissue engineering; chromosome engineering; embryo engineering; cellular, molecular and synthetic biology; metabolic engineering; bio-nanotechnology; micro/nano technologies; genetic engineering; transgenic technology ● Biomedical engineering and applications: biomechatronics; biomedical electronics; biomechanics; biomaterials; biomimetics; biomedical diagnostics; biomedical therapy; biomedical devices; sensors and circuits; biomedical imaging and medical information systems; implants and regenerative medicine; neurotechnology; clinical engineering; rehabilitation engineering ● Biochemical engineering and applications: metabolic pathway engineering; modeling and simulation ● Translational bioengineering
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