S. A. Katsyuba, T. P. Gerasimova, T. I. Burganov, V. E. Semenov
{"title":"Revisiting Tautomerism and Rotamerism of 1,2-Dyhidro-N-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine (Drug Xymedon) in Aqueous and Lipophilic Media","authors":"S. A. Katsyuba, T. P. Gerasimova, T. I. Burganov, V. E. Semenov","doi":"10.1134/S1070363225603527","DOIUrl":null,"url":null,"abstract":"<p>Combined Raman and quantum chemical studies of the rotamerism and tautomerism of 1,2-dyhidro-<i>N</i>-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine in solids and solutions revealed that its structural flexibility at ambient conditions is limited to conformational transformations within two groups of conformers. OH and C=O moieties of 1,2-dyhidro-<i>N</i>-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine are spatially separated in conformers of the first group, two of which are found experimentally in single crystals and in solid powder. The conformers of the second group, spectroscopically detected in solid powder of 1,2-dyhidro-<i>N</i>-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine and in its solutions in dichloromethane, are stabilized by intramolecular hydrogen bonds between OH and C=O moieties. Water tends to stabilize multiple conformers of the first group, which results in their strong domination in aqueous solutions of 1,2-dyhidro-<i>N</i>-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine. The conformers can be distinguished by positions of their bands in the Raman spectra. Representatives of the second group produce Raman bands at ~1090–1110 cm<sup>–1</sup>, while the bands at ~1290 and ~1070 cm<sup>–1</sup> indicate a presence of the first three most abundant in aqueous 1,2-dyhidro-<i>N</i>-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine conformers from the first group. One of these three conformers is found also in single crystals of 1,2-dyhidro-<i>N</i>-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine and in dichloromethane solution, where it produces the Raman band at ~1340 cm<sup>–1</sup>. The results of quantum chemical free energies calculations are in agreement with the experimental observations.</p>","PeriodicalId":761,"journal":{"name":"Russian Journal of General Chemistry","volume":"95 7","pages":"1882 - 1889"},"PeriodicalIF":0.8000,"publicationDate":"2025-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Russian Journal of General Chemistry","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1134/S1070363225603527","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Combined Raman and quantum chemical studies of the rotamerism and tautomerism of 1,2-dyhidro-N-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine in solids and solutions revealed that its structural flexibility at ambient conditions is limited to conformational transformations within two groups of conformers. OH and C=O moieties of 1,2-dyhidro-N-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine are spatially separated in conformers of the first group, two of which are found experimentally in single crystals and in solid powder. The conformers of the second group, spectroscopically detected in solid powder of 1,2-dyhidro-N-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine and in its solutions in dichloromethane, are stabilized by intramolecular hydrogen bonds between OH and C=O moieties. Water tends to stabilize multiple conformers of the first group, which results in their strong domination in aqueous solutions of 1,2-dyhidro-N-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine. The conformers can be distinguished by positions of their bands in the Raman spectra. Representatives of the second group produce Raman bands at ~1090–1110 cm–1, while the bands at ~1290 and ~1070 cm–1 indicate a presence of the first three most abundant in aqueous 1,2-dyhidro-N-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine conformers from the first group. One of these three conformers is found also in single crystals of 1,2-dyhidro-N-(2-hydroxyethyl)-4,6-dimethyl-2-oxopyrimidine and in dichloromethane solution, where it produces the Raman band at ~1340 cm–1. The results of quantum chemical free energies calculations are in agreement with the experimental observations.
重新审视1,2-二氢- n -(2-羟乙基)-4,6-二甲基-2-氧嘧啶(药物Xymedon)在水和亲脂介质中的互变异构和旋转异构
结合拉曼和量子化学研究了1,2-二氢- n -(2-羟乙基)-4,6-二甲基-2-氧嘧啶在固体和溶液中的旋转和互变异构性,揭示了其在环境条件下的结构灵活性仅限于两组构象内的构象转换。1,2-二氢- n -(2-羟乙基)-4,6-二甲基-2-氧嘧啶的OH和C=O基团在空间上是分开的,其中两个基团在单晶和固体粉末中被实验发现。在1,2-二氢- n -(2-羟乙基)-4,6-二甲基-2-氧嘧啶固体粉末及其在二氯甲烷中的溶液中,第二基团的构象被OH和C=O基团之间的分子内氢键稳定。水倾向于稳定第一基团的多个构象,这导致它们在1,2-二氢- n -(2-羟乙基)-4,6-二甲基-2-氧嘧啶的水溶液中具有很强的优势。这些构象可以通过它们在拉曼光谱中的能带位置来区分。第二基团的代表分子在~ 1090-1110 cm-1处产生拉曼带,而~1290和~1070 cm-1处的拉曼带表明,第一基团的1,2-二氢- n -(2-羟乙基)-4,6-二甲基-2-氧嘧啶构象中存在最丰富的前三个拉曼带。这三种构象中的一种也存在于1,2-二氢- n -(2-羟乙基)-4,6-二甲基-2-氧嘧啶的单晶和二氯甲烷溶液中,它在~1340 cm-1处产生拉曼带。量子化学自由能的计算结果与实验结果一致。
期刊介绍:
Russian Journal of General Chemistry is a journal that covers many problems that are of general interest to the whole community of chemists. The journal is the successor to Russia’s first chemical journal, Zhurnal Russkogo Khimicheskogo Obshchestva (Journal of the Russian Chemical Society ) founded in 1869 to cover all aspects of chemistry. Now the journal is focused on the interdisciplinary areas of chemistry (organometallics, organometalloids, organoinorganic complexes, mechanochemistry, nanochemistry, etc.), new achievements and long-term results in the field. The journal publishes reviews, current scientific papers, letters to the editor, and discussion papers.