Molecular-Level Insights into the NMR Relaxivity of Gadobutrol Using Quantum and Classical Molecular Simulations.

IF 5.7
Chemical & Biomedical Imaging Pub Date : 2025-04-09 eCollection Date: 2025-09-22 DOI:10.1021/cbmi.4c00080
Thiago J Pinheiro Dos Santos, Carla C Fraenza, Giselle de Araujo Lima E Souza, Emilia Pelegano-Titmuss, Dilipkumar N Asthagiri, Steven G Greenbaum, Walter G Chapman, Philip M Singer
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引用次数: 0

Abstract

MRI is an indispensable diagnostic tool in modern medicine; however, understanding the molecular-level processes governing NMR relaxation of water in the presence of MRI contrast agents remains a challenge, hindering the molecular-guided development of more effective contrast agents. By using quantum-based polarizable force fields, the first-of-its-kind molecular dynamics (MD) simulations of Gadobutrol are reported where the 1H NMR longitudinal relaxivity r 1 of the aqueous phase is determined without any adjustable parameters. The MD simulations of r 1 dispersion (i.e., frequency dependence) show good agreement with measurements at frequencies of interest in clinical MRI. Importantly, the simulations reveal key insights into the molecular level processes leading to r 1 dispersion by decomposing the NMR dipole-dipole autocorrelation function G(t) into a discrete set of molecular modes, analogous to the eigenmodes of a quantum harmonic oscillator. The molecular modes reveal important aspects of the underlying mechanisms governing r 1, such as its multiexponential nature and the importance of the second eigenmodal decay. By simply analyzing the MD trajectories on a parameter-free approach, the Gadobutrol simulations show that the outer-shell water contributes ∼50% of the total relaxivity r 1 compared to the inner-shell water, in contrast to simulations of (nonchelated) gadolinium-aqua where the outer shell contributes only ∼15% of r 1. The deviation between simulations and measurements of r 1 below clinical MRI frequencies is used to determine the low-frequency electron-spin relaxation time for Gadobutrol, in good agreement with independent studies.

利用量子和经典分子模拟对Gadobutrol核磁共振弛豫度的分子水平见解。
MRI是现代医学中不可缺少的诊断工具;然而,理解在MRI造影剂存在下控制水核磁共振弛豫的分子水平过程仍然是一个挑战,阻碍了分子引导下更有效造影剂的开发。利用量子极化力场,首次进行了Gadobutrol的分子动力学(MD)模拟,在不需要任何可调参数的情况下确定了水相的1H NMR纵向弛豫度r 1。磁共振成像(MD)对r1色散(即频率依赖性)的模拟与临床MRI感兴趣频率的测量结果很好地吻合。重要的是,通过将核磁共振偶极子-偶极子自相关函数G(t)分解为一组离散的分子模式,模拟揭示了导致r1色散的分子水平过程的关键见解,类似于量子谐振子的本征模式。分子模式揭示了控制r1的潜在机制的重要方面,例如它的多指数性质和第二次本征模态衰减的重要性。通过简单地分析无参数方法上的MD轨迹,Gadobutrol模拟表明,与内壳水相比,外层水贡献了总弛豫率r 1的50%,而(非螯合)钆水的模拟仅贡献了r 1的15%。在临床MRI频率以下的r1的模拟和测量之间的偏差被用来确定Gadobutrol的低频电子自旋弛豫时间,与独立研究结果很好地一致。
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来源期刊
Chemical & Biomedical Imaging
Chemical & Biomedical Imaging 化学与生物成像-
CiteScore
1.00
自引率
0.00%
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0
期刊介绍: Chemical & Biomedical Imaging is a peer-reviewed open access journal devoted to the publication of cutting-edge research papers on all aspects of chemical and biomedical imaging. This interdisciplinary field sits at the intersection of chemistry physics biology materials engineering and medicine. The journal aims to bring together researchers from across these disciplines to address cutting-edge challenges of fundamental research and applications.Topics of particular interest include but are not limited to:Imaging of processes and reactionsImaging of nanoscale microscale and mesoscale materialsImaging of biological interactions and interfacesSingle-molecule and cellular imagingWhole-organ and whole-body imagingMolecular imaging probes and contrast agentsBioluminescence chemiluminescence and electrochemiluminescence imagingNanophotonics and imagingChemical tools for new imaging modalitiesChemical and imaging techniques in diagnosis and therapyImaging-guided drug deliveryAI and machine learning assisted imaging
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