Cellular phospho-signaling map of the enigmatic serine/threonine kinase MAST2

IF 2.2 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Isha Fathima , Althaf Mahin , Pahal Priyanka, Nazah Naurah Vattoth, Ayishath Nishana, Athira Perunelly Gopalakrishnan, Sowmya Soman, Rajesh Raju
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引用次数: 0

Abstract

Background

MAST2 (Microtubule-Associated Serine/Threonine Kinase 2) is an enigmatic serine/threonine kinase that is considered to bridge microtubule-associated cytoskeletal architecture through its phospho-regulatory networks. Yet, MAST2 remains a dark horse in the human kinome, as the molecular details on its structure, upstream regulators, and downstream phosphorylation targets remain unknown.

Methods and results

To interpret MAST2-linked phospho-signaling dynamics, PubMed-indexed articles were curated based on predefined MeSH terms to obtain global cellular phosphoproteomics datasets. Among 105 class I phosphosites in MAST2 identified across cellular phosphoproteomics datasets, 2 phosphosites, S74 and S148, were represented more abundantly compared to other phosphosites, making them predominant and functionally significant. Expression coregulation analysis, aimed at interpreting phosphosites that consistently show either similar or opposite patterns of expression, was performed by computing the expression patterns of phosphosites in parallel with the predominant MAST2 phosphosite. Their frequencies were then ranked across differential datasets to ensure consistency, and Fisher's exact test was performed to assess the likelihood of the coregulation pattern. Potential biases within the datasets were mitigated using additional cutoffs. Interpreting these datasets, we identified the majority of high-confidence coregulated protein phosphosites of both predominant phosphosites to be involved in transcriptional regulation. This is consistent with reports that a nearby Arg89Gln mutation in MAST2 disrupts its transcriptional regulatory activity. Co-occurrence analysis of phosphosites within MAST2 revealed that these predominant sites tend to co-occur positively and share similarity in expression coregulation patterns with phosphosites in other proteins. Finally, novel upstream kinases that potentially phosphorylate the predominant phosphosites of MAST2, as well as potential downstream substrates that are phosphorylated by MAST2, were also identified from the high-confidence coregulation dataset.

Conclusions

We propose that phosphorylations at S74 and S148 of MAST2 are functionally similar, and that these phosphosites are candidate regulatory sites influencing the transcriptional regulatory activity of MAST2.
神秘丝氨酸/苏氨酸激酶MAST2的细胞磷酸化信号图谱
mast2(微管相关丝氨酸/苏氨酸激酶2)是一种神秘的丝氨酸/苏氨酸激酶,被认为通过其磷酸化调控网络架起微管相关细胞骨架结构的桥梁。然而,MAST2仍然是人类基因组中的一匹黑马,因为其结构、上游调节因子和下游磷酸化靶点的分子细节仍然未知。方法和结果为了解释mast2连接的磷酸化信号动力学,基于预定义的MeSH术语对pubmed索引的文章进行了整理,以获得全球细胞磷酸化蛋白质组学数据集。在细胞磷酸化蛋白质组学数据集中鉴定的105个MAST2 I类磷酸化位点中,与其他磷酸化位点相比,2个磷酸化位点S74和S148的表达量更丰富,具有优势和功能意义。表达共调节分析旨在解释一致显示相似或相反表达模式的磷位点,通过计算与主要的MAST2磷位点平行的磷位点的表达模式来执行。然后将它们的频率在不同的数据集中进行排序,以确保一致性,并执行Fisher的精确测试来评估协同调节模式的可能性。使用额外的截止值减轻了数据集中的潜在偏差。通过对这些数据集的解读,我们确定了两种主要磷酸化位点的大多数高置信度共调控蛋白磷酸化位点参与转录调控。这与MAST2附近的Arg89Gln突变破坏其转录调节活性的报道是一致的。对MAST2中磷酸化位点的共现分析显示,这些优势位点倾向于与其他蛋白中的磷酸化位点共现,并在表达共调控模式上具有相似性。最后,研究人员还从高可信度的协同调节数据集中确定了可能磷酸化MAST2主要磷酸化位点的新型上游激酶,以及可能被MAST2磷酸化的下游底物。结论我们认为,MAST2的S74和S148位点的磷酸化在功能上是相似的,这些磷酸化位点是影响MAST2转录调控活性的候选调控位点。
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来源期刊
Biochemistry and Biophysics Reports
Biochemistry and Biophysics Reports Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
4.60
自引率
0.00%
发文量
191
审稿时长
59 days
期刊介绍: Open access, online only, peer-reviewed international journal in the Life Sciences, established in 2014 Biochemistry and Biophysics Reports (BB Reports) publishes original research in all aspects of Biochemistry, Biophysics and related areas like Molecular and Cell Biology. BB Reports welcomes solid though more preliminary, descriptive and small scale results if they have the potential to stimulate and/or contribute to future research, leading to new insights or hypothesis. Primary criteria for acceptance is that the work is original, scientifically and technically sound and provides valuable knowledge to life sciences research. We strongly believe all results deserve to be published and documented for the advancement of science. BB Reports specifically appreciates receiving reports on: Negative results, Replication studies, Reanalysis of previous datasets.
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