{"title":"GTS: A Python toolkit for building Gibbs thermodynamic surface with application to obtain high-pressure melting data","authors":"Xuan Zhao, Kun Yin","doi":"10.1016/j.cpc.2025.109858","DOIUrl":null,"url":null,"abstract":"<div><div>Various methods are commonly applied for data acquisition in the melting process of substances under high pressure. However, throughout the application of these methods, challenges persist, including significant time and computational requirements, as well as issues related to hysteresis effects. We introduce the GTS package, a Python toolkit based on the work of J. W. Gibbs to obtain melting data at high pressures in a geometrical manner. We outline the theory behind constructing the Gibbs thermodynamic surface, which includes regions representing the solid and liquid phases. Several examples are presented to demonstrate program execution and validate accuracy by comparing results with prior studies. GTS is openly accessible on GitHub: <span><span>https://github.com/computation-mineral-physics-group/GTS</span><svg><path></path></svg></span>.</div></div><div><h3>Program summary</h3><div><em>Program Title:</em> GTS</div><div><em>CPC Library link to program files:</em> <span><span><span>https://doi.org/10.17632/wkkkv6twgk.1</span></span><svg><path></path></svg></span></div><div><em>Developer's repository link:</em> <span><span><span>https://github.com/computation-mineral-physics-group/GTS</span></span><svg><path></path></svg></span></div><div><em>Licensing provisions:</em> GNU General Public License, version 3</div><div><em>Programming language:</em> Python 3</div><div><em>Nature of problem:</em> A Python toolkit that efficiently obtains high-pressure melting data, including melting points and thermodynamic potentials of materials, by constructing the Gibbs thermodynamic surface using a geometrical method.</div><div><em>Solution method:</em> With the <em>ab initio</em> molecular dynamics (AIMD) simulation data in the NVT (N, number of atoms; V, volume; T, temperature) ensemble and the reference point, GTS consists of two steps: first building the surface, second producing the melting data.</div></div>","PeriodicalId":285,"journal":{"name":"Computer Physics Communications","volume":"317 ","pages":"Article 109858"},"PeriodicalIF":3.4000,"publicationDate":"2025-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Physics Communications","FirstCategoryId":"101","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0010465525003601","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
Various methods are commonly applied for data acquisition in the melting process of substances under high pressure. However, throughout the application of these methods, challenges persist, including significant time and computational requirements, as well as issues related to hysteresis effects. We introduce the GTS package, a Python toolkit based on the work of J. W. Gibbs to obtain melting data at high pressures in a geometrical manner. We outline the theory behind constructing the Gibbs thermodynamic surface, which includes regions representing the solid and liquid phases. Several examples are presented to demonstrate program execution and validate accuracy by comparing results with prior studies. GTS is openly accessible on GitHub: https://github.com/computation-mineral-physics-group/GTS.
Program summary
Program Title: GTS
CPC Library link to program files:https://doi.org/10.17632/wkkkv6twgk.1
Licensing provisions: GNU General Public License, version 3
Programming language: Python 3
Nature of problem: A Python toolkit that efficiently obtains high-pressure melting data, including melting points and thermodynamic potentials of materials, by constructing the Gibbs thermodynamic surface using a geometrical method.
Solution method: With the ab initio molecular dynamics (AIMD) simulation data in the NVT (N, number of atoms; V, volume; T, temperature) ensemble and the reference point, GTS consists of two steps: first building the surface, second producing the melting data.
期刊介绍:
The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper.
Computer Programs in Physics (CPiP)
These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged.
Computational Physics Papers (CP)
These are research papers in, but are not limited to, the following themes across computational physics and related disciplines.
mathematical and numerical methods and algorithms;
computational models including those associated with the design, control and analysis of experiments; and
algebraic computation.
Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.