A signature serum biomarker for non-invasive diagnosis of preeclampsia patients.

IF 2.7 3区 医学 Q2 GENETICS & HEREDITY
Teeba Ammar Rashid, Shahd Rajab Farhan, Aysar Ashour Khalaf, Gaurav Sanghvi, Subasini Uthirapathy, Renuka Jyothi, Mayank Kundlas, Kamal Kant Joshi, Anna Rudova, Yasser Fakri Mustafa
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Abstract

Purpose: This study seeks to identify a non-invasive biomarker for preeclampsia (PE), given its considerable influence on both maternal and fetal health.

Methods: The identification of differentially expressed genes (DEGs) in PE serum was conducted utilizing GSE192902. Weighted gene co-expression network analysis (WGCNA) was employed to identify functional modules, which were subsequently evaluated for their biological functions. Binary logistic regression was employed to evaluate genes derived from the intersection of DEGs and the most correlated module, with the aim of developing a biomarker model. The analysis of placental gene expression profiles was conducted utilizing GSE234729, and the model underwent validation in GSE149437.

Results: Over 1500 DEGs were identified in the serum of PE patients, with 63% exhibiting downregulation. Co-expression analysis revealed that the expression patterns of PE are structured into 13 distinct modules, with the dark-red module, comprising 55 genes, demonstrating the most significant correlation to the onset of PE. Following this, eight genes from the 26 differentially expressed genes (ADRB1, ARX, C2orf72, FOXB2, HIC1, IRX4, MEX3D, and MIR6724-4) were employed to construct a biomarker model, which attained an area under the curve of 76% (95% CI: 69-83%) in the training cohort and 74% (95% CI: 61-87%) in the validation cohort. Six DEGs were identified from the intersection of results pertaining to serum, placenta, and the dark-red module. However, only two, C2orf72 and RASGEF1C, exhibited consistent downregulation in both placenta and blood.

Conclusion: This comprehensive analysis reveals a promising biomarker model that may facilitate early detection of PE.

一种无创诊断子痫前期患者的标志性血清生物标志物。
目的:本研究旨在确定子痫前期(PE)的非侵入性生物标志物,因为它对母体和胎儿健康都有相当大的影响。方法:采用GSE192902对PE血清中差异表达基因(deg)进行鉴定。采用加权基因共表达网络分析(WGCNA)鉴定功能模块,随后对其生物学功能进行评估。采用二元逻辑回归来评估从deg和最相关模块的交集中衍生的基因,目的是建立生物标志物模型。利用GSE234729对胎盘基因表达谱进行分析,并用GSE149437对模型进行验证。结果:PE患者血清中有超过1500个deg,其中63%出现下调。共表达分析显示,PE的表达模式分为13个不同的模块,其中暗红色模块包含55个基因,与PE发病的相关性最显著。随后,从26个差异表达基因(ADRB1、ARX、C2orf72、FOXB2、HIC1、IRX4、MEX3D和MIR6724-4)中的8个基因构建生物标志物模型,训练组和验证组的曲线下面积分别为76% (95% CI: 69-83%)和74% (95% CI: 61-87%)。从血清、胎盘和暗红色模块的交叉结果中鉴定出6个deg。然而,只有C2orf72和RASGEF1C在胎盘和血液中表现出一致的下调。结论:这项综合分析揭示了一个有前途的生物标志物模型,可能有助于早期发现PE。
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来源期刊
CiteScore
5.70
自引率
9.70%
发文量
286
审稿时长
1 months
期刊介绍: The Journal of Assisted Reproduction and Genetics publishes cellular, molecular, genetic, and epigenetic discoveries advancing our understanding of the biology and underlying mechanisms from gametogenesis to offspring health. Special emphasis is placed on the practice and evolution of assisted reproduction technologies (ARTs) with reference to the diagnosis and management of diseases affecting fertility. Our goal is to educate our readership in the translation of basic and clinical discoveries made from human or relevant animal models to the safe and efficacious practice of human ARTs. The scientific rigor and ethical standards embraced by the JARG editorial team ensures a broad international base of expertise guiding the marriage of contemporary clinical research paradigms with basic science discovery. JARG publishes original papers, minireviews, case reports, and opinion pieces often combined into special topic issues that will educate clinicians and scientists with interests in the mechanisms of human development that bear on the treatment of infertility and emerging innovations in human ARTs. The guiding principles of male and female reproductive health impacting pre- and post-conceptional viability and developmental potential are emphasized within the purview of human reproductive health in current and future generations of our species. The journal is published in cooperation with the American Society for Reproductive Medicine, an organization of more than 8,000 physicians, researchers, nurses, technicians and other professionals dedicated to advancing knowledge and expertise in reproductive biology.
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