PSCF+: An Extended and Improved Open-Source Software Package for Polymer Self-Consistent Field Calculations

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Juntong He,  and , Qiang Wang*, 
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引用次数: 0

Abstract

We introduce PSCF+, an extended and improved open-source software package for polymer self-consistent field (SCF) calculations of block copolymer self-assembly. PSCF+ supports various chain models (including the continuous Gaussian chains, discrete Gaussian chains, and freely jointed chains), nonbonded isotropic pair repulsions (including the Dirac δ-function, Gaussian, soft-sphere, and dissipative particle dynamics potentials), and system compressibility (compressible vs incompressible), thus enabling direct comparisons with molecular simulations and field-theoretic simulations based on the same model system without any parameter-fitting. Several recently proposed algorithms are implemented in PSCF+ to greatly reduce the GPU memory usage and speed-up the SCF calculations, including the Richardson-extrapolated pseudospectral methods for solving the modified diffusion equations, the crystallographic discrete cosine transforms taking advantage of the partial symmetry of some ordered phases, and the “slice” algorithm for storing chain propagators. It also avoids redundant calculations and storage of propagators for chain architectures such as bottlebrush block copolymers, and uses an improved iterative scheme for solving SCF equations in athermal solvent conditions. Last but not least, it implements the automated calculation along a path to efficiently calculate free-energy curves and phase boundaries. PSCF+ is freely available and remains under active development, with further extensions planned to broaden its applicability to more complex polymeric systems.

Abstract Image

PSCF+:一个扩展和改进的开源软件包,用于聚合物自洽场计算。
我们介绍了PSCF+,一个扩展和改进的开源软件包,用于嵌段共聚物自组装的聚合物自一致场(SCF)计算。PSCF+支持各种链模型(包括连续高斯链、离散高斯链和自由连接链)、非键各向同性对排斥(包括狄拉克δ函数、高斯势、软球势和耗散粒子动力学势)和系统可压缩性(可压缩与不可压缩),因此可以直接比较基于相同模型系统的分子模拟和场论模拟,而无需任何参数拟合。最近提出的几种算法在PSCF+中实现,以大大减少GPU内存的使用并加快SCF的计算速度,包括用于求解修正扩散方程的richardson外推伪谱方法,利用某些有序相的部分对称性的晶体离散余弦变换,以及用于存储链传播子的“切片”算法。它还避免了链结构(如瓶刷嵌段共聚物)传播体的冗余计算和存储,并使用改进的迭代方案在非热溶剂条件下求解SCF方程。最后,实现了沿路径的自动计算,有效地计算了自由能曲线和相边界。PSCF+是免费的,并且仍在积极开发中,计划进一步扩展其适用于更复杂的聚合物体系。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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