{"title":"Fast automatically differentiable matrix functions and applications in molecular simulations","authors":"Tina Torabi , Timon S. Gutleb , Christoph Ortner","doi":"10.1016/j.cpc.2025.109832","DOIUrl":null,"url":null,"abstract":"<div><div>We describe efficient differentiation methods for computing Jacobians and gradients of a large class of matrix functions including the matrix logarithm <span><math><mi>log</mi><mo></mo><mo>(</mo><mi>A</mi><mo>)</mo></math></span> and <em>p</em>-th roots <span><math><msup><mrow><mi>A</mi></mrow><mrow><mfrac><mrow><mn>1</mn></mrow><mrow><mi>p</mi></mrow></mfrac></mrow></msup></math></span>. We exploit contour integrals and conformal maps as described by Hale et al. (2008) <span><span>[34]</span></span> for evaluation and differentiation and analyze the computational complexity as well as numerical accuracy compared to high accuracy finite difference methods. As a demonstrator application we compute properties of structural defects in silicon crystals at positive temperatures, requiring efficient and accurate gradients of matrix trace-logarithms.</div></div>","PeriodicalId":285,"journal":{"name":"Computer Physics Communications","volume":"317 ","pages":"Article 109832"},"PeriodicalIF":3.4000,"publicationDate":"2025-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Physics Communications","FirstCategoryId":"101","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0010465525003340","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
We describe efficient differentiation methods for computing Jacobians and gradients of a large class of matrix functions including the matrix logarithm and p-th roots . We exploit contour integrals and conformal maps as described by Hale et al. (2008) [34] for evaluation and differentiation and analyze the computational complexity as well as numerical accuracy compared to high accuracy finite difference methods. As a demonstrator application we compute properties of structural defects in silicon crystals at positive temperatures, requiring efficient and accurate gradients of matrix trace-logarithms.
期刊介绍:
The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper.
Computer Programs in Physics (CPiP)
These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged.
Computational Physics Papers (CP)
These are research papers in, but are not limited to, the following themes across computational physics and related disciplines.
mathematical and numerical methods and algorithms;
computational models including those associated with the design, control and analysis of experiments; and
algebraic computation.
Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.