Harnessing historical genebank data to accelerate pea breeding.

IF 4.2 1区 农林科学 Q1 AGRONOMY
Lanique Niels, Jochen Christoph Reif, Lars-Gernot Otto, Vilson Mirdita, Markus Oppermann, Ulrike Lohwasser, Matthias Kotter, Stephan Weise, Samira El Hanafi
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Abstract

The German Federal Ex Situ Genebank for Agricultural and Horticultural Crops (IPK) harbours over 3000 pea plant genetic resources (PGRs), backed up by corresponding information across 16 key agronomic and economical traits. The unbalanced structure and inconsistent format of this historical data has precluded effective leverage of genebank accessions, despite the opportunities contained in its genetic diversity. Therefore, a three-step statistical approach founded in linear mixed models was implemented to enable a rigorous and targeted data curation. Spring accessions revealed considerable breeding potential, with protein content exceeding market standards by almost one-fifth and with hundred grain weight that could match the upper limits reported for European elite varieties. This variation is embedded within structured populations, comprising five convarieties including sugar snaps and field pea, adding value for breeding across diverse morphotypes and market segments. Winter accessions demonstrated cold resilience, with post-winter survival rate up to 79.27% under minimum temperatures as low as - 17.1 °C. This variation is of particular relevance given the limited availability of winter-hardy cultivars able to evade summer drought and heat stresses. Transformation of the IPK Genebank into a bio-digital resource redirects formerly static material into central leverage for plant breeding in view of contemporary challenges. As such, this investigation activated the IPK pea population for use in among others breeding for a wide variety of ideotypes, research into adaptation, and future combination with omics studies.

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利用历史基因库数据加速豌豆育种。
德国联邦农业和园艺作物迁地基因库(IPK)拥有3000多个豌豆植物遗传资源(pgr),并以16个关键农艺和经济性状的相应信息为后盾。这种历史数据的不平衡结构和不一致的格式妨碍了对基因库的有效利用,尽管其遗传多样性中包含着机会。因此,在线性混合模型中建立的三步统计方法被实施,以实现严格和有针对性的数据管理。春季品种显示出相当大的育种潜力,蛋白质含量超过市场标准近五分之一,百粒重可与欧洲优良品种报道的上限相匹配。这种变异嵌入到结构种群中,包括五种共变品种,包括糖豆和大田豌豆,为不同形态和细分市场的育种增加了价值。冬季品种表现出较强的抗寒性,在- 17.1℃的低温条件下,冬后成活率高达79.27%。考虑到能够避免夏季干旱和热胁迫的耐寒品种的有限可用性,这种变异是特别相关的。将IPK基因库转变为生物数字资源,将以前静态的材料重新定向为植物育种的中心杠杆,以应对当代的挑战。因此,这项研究激活了IPK豌豆群体,用于多种理想型的育种、适应性研究以及未来与组学研究的结合。
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来源期刊
CiteScore
9.60
自引率
7.40%
发文量
241
审稿时长
2.3 months
期刊介绍: Theoretical and Applied Genetics publishes original research and review articles in all key areas of modern plant genetics, plant genomics and plant biotechnology. All work needs to have a clear genetic component and significant impact on plant breeding. Theoretical considerations are only accepted in combination with new experimental data and/or if they indicate a relevant application in plant genetics or breeding. Emphasizing the practical, the journal focuses on research into leading crop plants and articles presenting innovative approaches.
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