{"title":"On the different flavours of practical identifiability","authors":"Mio Heinrich , Rafael Arutjunjan , Jens Timmer","doi":"10.1016/j.coisb.2025.100556","DOIUrl":null,"url":null,"abstract":"<div><div>Identifiability is fundamental to any parameter estimation process and plays a role in a wide range of scientific research disciplines. Structural identifiability is a well-defined and purely model-based property that can be analysed in the absence of experimentally measured data with various methods. In contrast, practical identifiability lacks a concise technical definition that is agreed upon, leading to conflicting assessments. We focus on the practical identifiability analysis of ordinary differential equation models in systems biology and point out the differences between definitions and their implications. We differentiate between classifications based on sensitivity and classifications based on confidence intervals. We advocate for precise wording in discussions of practical identifiability analysis results so that the employed method is clear from the terminology.</div><div>We propose that model parameters should be termed a priori or a posteriori sensitive if sensitivity-based methods are used and finitely identified if the assessment is based on confidence intervals.</div></div>","PeriodicalId":37400,"journal":{"name":"Current Opinion in Systems Biology","volume":"42 ","pages":"Article 100556"},"PeriodicalIF":2.2000,"publicationDate":"2025-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Current Opinion in Systems Biology","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2452310025000162","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Identifiability is fundamental to any parameter estimation process and plays a role in a wide range of scientific research disciplines. Structural identifiability is a well-defined and purely model-based property that can be analysed in the absence of experimentally measured data with various methods. In contrast, practical identifiability lacks a concise technical definition that is agreed upon, leading to conflicting assessments. We focus on the practical identifiability analysis of ordinary differential equation models in systems biology and point out the differences between definitions and their implications. We differentiate between classifications based on sensitivity and classifications based on confidence intervals. We advocate for precise wording in discussions of practical identifiability analysis results so that the employed method is clear from the terminology.
We propose that model parameters should be termed a priori or a posteriori sensitive if sensitivity-based methods are used and finitely identified if the assessment is based on confidence intervals.
期刊介绍:
Current Opinion in Systems Biology is a new systematic review journal that aims to provide specialists with a unique and educational platform to keep up-to-date with the expanding volume of information published in the field of Systems Biology. It publishes polished, concise and timely systematic reviews and opinion articles. In addition to describing recent trends, the authors are encouraged to give their subjective opinion on the topics discussed. As this is such a broad discipline, we have determined themed sections each of which is reviewed once a year. The following areas will be covered by Current Opinion in Systems Biology: -Genomics and Epigenomics -Gene Regulation -Metabolic Networks -Cancer and Systemic Diseases -Mathematical Modelling -Big Data Acquisition and Analysis -Systems Pharmacology and Physiology -Synthetic Biology -Stem Cells, Development, and Differentiation -Systems Biology of Mold Organisms -Systems Immunology and Host-Pathogen Interaction -Systems Ecology and Evolution