On the different flavours of practical identifiability

IF 2.2 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY
Mio Heinrich , Rafael Arutjunjan , Jens Timmer
{"title":"On the different flavours of practical identifiability","authors":"Mio Heinrich ,&nbsp;Rafael Arutjunjan ,&nbsp;Jens Timmer","doi":"10.1016/j.coisb.2025.100556","DOIUrl":null,"url":null,"abstract":"<div><div>Identifiability is fundamental to any parameter estimation process and plays a role in a wide range of scientific research disciplines. Structural identifiability is a well-defined and purely model-based property that can be analysed in the absence of experimentally measured data with various methods. In contrast, practical identifiability lacks a concise technical definition that is agreed upon, leading to conflicting assessments. We focus on the practical identifiability analysis of ordinary differential equation models in systems biology and point out the differences between definitions and their implications. We differentiate between classifications based on sensitivity and classifications based on confidence intervals. We advocate for precise wording in discussions of practical identifiability analysis results so that the employed method is clear from the terminology.</div><div>We propose that model parameters should be termed a priori or a posteriori sensitive if sensitivity-based methods are used and finitely identified if the assessment is based on confidence intervals.</div></div>","PeriodicalId":37400,"journal":{"name":"Current Opinion in Systems Biology","volume":"42 ","pages":"Article 100556"},"PeriodicalIF":2.2000,"publicationDate":"2025-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Current Opinion in Systems Biology","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2452310025000162","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

Identifiability is fundamental to any parameter estimation process and plays a role in a wide range of scientific research disciplines. Structural identifiability is a well-defined and purely model-based property that can be analysed in the absence of experimentally measured data with various methods. In contrast, practical identifiability lacks a concise technical definition that is agreed upon, leading to conflicting assessments. We focus on the practical identifiability analysis of ordinary differential equation models in systems biology and point out the differences between definitions and their implications. We differentiate between classifications based on sensitivity and classifications based on confidence intervals. We advocate for precise wording in discussions of practical identifiability analysis results so that the employed method is clear from the terminology.
We propose that model parameters should be termed a priori or a posteriori sensitive if sensitivity-based methods are used and finitely identified if the assessment is based on confidence intervals.
关于实际可识别性的不同口味
可辨识性是任何参数估计过程的基础,在广泛的科学研究学科中起着重要作用。结构可识别性是一种定义良好的纯粹基于模型的属性,可以在没有实验测量数据的情况下用各种方法进行分析。相比之下,实际可识别性缺乏商定的简明技术定义,导致相互矛盾的评估。我们着重于系统生物学中常微分方程模型的实际可辨识性分析,并指出定义之间的差异及其含义。我们区分基于灵敏度的分类和基于置信区间的分类。我们提倡在讨论实际的可识别性分析结果时措辞准确,以便所采用的方法从术语上清楚。我们建议,如果使用基于灵敏度的方法,模型参数应称为先验或后验敏感,如果评估基于置信区间,则模型参数应被有限识别。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Current Opinion in Systems Biology
Current Opinion in Systems Biology Mathematics-Applied Mathematics
CiteScore
7.10
自引率
2.70%
发文量
20
期刊介绍: Current Opinion in Systems Biology is a new systematic review journal that aims to provide specialists with a unique and educational platform to keep up-to-date with the expanding volume of information published in the field of Systems Biology. It publishes polished, concise and timely systematic reviews and opinion articles. In addition to describing recent trends, the authors are encouraged to give their subjective opinion on the topics discussed. As this is such a broad discipline, we have determined themed sections each of which is reviewed once a year. The following areas will be covered by Current Opinion in Systems Biology: -Genomics and Epigenomics -Gene Regulation -Metabolic Networks -Cancer and Systemic Diseases -Mathematical Modelling -Big Data Acquisition and Analysis -Systems Pharmacology and Physiology -Synthetic Biology -Stem Cells, Development, and Differentiation -Systems Biology of Mold Organisms -Systems Immunology and Host-Pathogen Interaction -Systems Ecology and Evolution
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信