The GFB Tree and Tree Imbalance Indices.

IF 2.2 4区 数学 Q2 BIOLOGY
Sean Cleary, Mareike Fischer, Katherine St John
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Abstract

Tree balance plays an important role in various research areas in phylogenetics and computer science. Typically, it is measured with the help of a balance index or imbalance index. There are more than 25 such indices available, recently surveyed in a book by Fischer et al. They are used to rank rooted binary trees on a scale from the most balanced to the least balanced. We show that a wide range of subtree-size based measures satisfying concavity and monotonicity conditions are minimized by the complete or greedy from the bottom (GFB) tree and maximized by the caterpillar tree, yielding an infinitely large family of distinct new imbalance indices. Answering an open question from the literature, we show that one such established measure, the s ^ -shape statistic, has the GFB tree as its unique minimizer. We also provide an alternative characterization of GFB trees, showing that they are equivalent to complete trees, which arise in different contexts. We give asymptotic bounds on the expected s ^ -shape statistic under the uniform and Yule-Harding distributions of trees, and answer questions for the related Q-shape statistic as well.

Abstract Image

Abstract Image

Abstract Image

GFB树和树木失衡指数。
树平衡在系统发育学和计算机科学的各个研究领域中起着重要的作用。通常,它是借助平衡指数或不平衡指数来测量的。Fischer等人最近在一本书中调查了超过25个这样的指数。它们被用来按照从最平衡到最不平衡的比例对有根二叉树进行排序。我们证明了满足凹性和单调性条件的广泛的基于子树大小的度量被完全或贪婪底(GFB)树最小化,并被毛虫树最大化,从而产生无限大的不同的新不平衡指标族。回答文献中的一个开放问题,我们证明了这样一个已建立的度量,s ^ -形统计量,具有GFB树作为其唯一的最小化器。我们还提供了GFB树的另一种表征,表明它们等同于在不同背景下出现的完整树。给出了树的均匀分布和Yule-Harding分布下期望s ^ -形统计量的渐近界,并回答了有关q -形统计量的问题。
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来源期刊
CiteScore
3.90
自引率
8.60%
发文量
123
审稿时长
7.5 months
期刊介绍: The Bulletin of Mathematical Biology, the official journal of the Society for Mathematical Biology, disseminates original research findings and other information relevant to the interface of biology and the mathematical sciences. Contributions should have relevance to both fields. In order to accommodate the broad scope of new developments, the journal accepts a variety of contributions, including: Original research articles focused on new biological insights gained with the help of tools from the mathematical sciences or new mathematical tools and methods with demonstrated applicability to biological investigations Research in mathematical biology education Reviews Commentaries Perspectives, and contributions that discuss issues important to the profession All contributions are peer-reviewed.
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