An intelligent method for detection of small target fungal wheat spores based on an improved YOLOv5 with microscopic images.

IF 4.4 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Zhizhou Ren, Kun Liang, Yingqi Zhang, Jinpeng Song, Xiaoxiao Wu, Chi Zhang, Xiuming Mei, Yi Zhang, Xin Liu
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Abstract

Wheat is significantly impacted by fungal diseases, which result in severe economic losses. These diseases result from pathogenic spores invading wheat. Rapid and accurate detection of these spores is essential for post-harvest contamination risk assessment and early warning. Traditional detection methods are time-consuming and labor-intensive, and difficult to detect small target spores in complex environments. Therefore, a YOLO-ASF-MobileViT detection algorithm is proposed to detect pathogenic wheat spores with varying sizes, shapes, and textures. Four types of common pathogenic wheat spores are used as the study object, including Fusarium graminearum, Aspergillus flavus, Tilletia foetida (sporidium maturum), and Tilletia foetida (sporidium immaturum). The Attentional Scale Sequence Fusion (ASF) is integrated into the original YOLOv5s to enhance the capture of small details in spore images and fuse multi-scale feature information of spores. Additionally, the Mobile Vision Transformer (MobileViT) attention mechanism is incorporated to enhance both local and global feature extraction for small spores. Experimental results show that the proposed YOLO-ASF-MobileViT model achieves an overall mAP@0.5 of 97.0%, outperforming advanced detectors such as TPH-YOLO (95.6%) and MG-YOLO (95.5%). Compared to the baseline YOLOv5s model, it improves the average detection accuracy by 1.6%, with a notable 4.3% increase in detecting small Aspergillus flavus spores (reaching 90.8%). The model maintains high robustness in challenging scenarios such as spore adhesion, occlusion, blur, and noise. This approach enables efficient and accurate detection of wheat fungal spores, supporting early contamination warning in post-harvest management.

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基于改进的YOLOv5显微图像的小麦小目标真菌孢子智能检测方法
小麦受到真菌病害的严重影响,造成严重的经济损失。这些疾病是由致病孢子侵入小麦引起的。快速和准确地检测这些孢子对于收获后污染风险评估和早期预警至关重要。传统的检测方法耗时费力,难以在复杂的环境中检测到小目标孢子。为此,提出了一种YOLO-ASF-MobileViT检测算法,用于检测不同大小、形状和质地的小麦病原孢子。本文以四种常见致病小麦孢子为研究对象,分别为:谷物镰刀菌、黄曲霉、成熟孢子和未成熟孢子。将注意力尺度序列融合(attention Scale Sequence Fusion, ASF)技术整合到原始的YOLOv5s中,增强孢子图像小细节的捕捉能力,融合孢子的多尺度特征信息。此外,结合移动视觉变压器(MobileViT)注意力机制,增强了小孢子的局部和全局特征提取。实验结果表明,YOLO-ASF-MobileViT模型的总体准确率mAP@0.5为97.0%,优于TPH-YOLO(95.6%)和MG-YOLO(95.5%)等先进的检测器。与基线YOLOv5s模型相比,平均检测准确率提高1.6%,其中对黄曲霉小孢子的检测准确率显著提高4.3%(达到90.8%)。该模型在孢子粘附、遮挡、模糊和噪声等具有挑战性的情况下保持高鲁棒性。这种方法能够有效和准确地检测小麦真菌孢子,支持收获后管理中的早期污染预警。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Plant Methods
Plant Methods 生物-植物科学
CiteScore
9.20
自引率
3.90%
发文量
121
审稿时长
2 months
期刊介绍: Plant Methods is an open access, peer-reviewed, online journal for the plant research community that encompasses all aspects of technological innovation in the plant sciences. There is no doubt that we have entered an exciting new era in plant biology. The completion of the Arabidopsis genome sequence, and the rapid progress being made in other plant genomics projects are providing unparalleled opportunities for progress in all areas of plant science. Nevertheless, enormous challenges lie ahead if we are to understand the function of every gene in the genome, and how the individual parts work together to make the whole organism. Achieving these goals will require an unprecedented collaborative effort, combining high-throughput, system-wide technologies with more focused approaches that integrate traditional disciplines such as cell biology, biochemistry and molecular genetics. Technological innovation is probably the most important catalyst for progress in any scientific discipline. Plant Methods’ goal is to stimulate the development and adoption of new and improved techniques and research tools and, where appropriate, to promote consistency of methodologies for better integration of data from different laboratories.
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