Whole-Genome Sequencing Analysis of the Multidrug-Resistant Aeromonas caviae Strain AC1520 Isolated from a Patient with Urinary Tract Infection.

IF 1.9 4区 医学 Q3 INFECTIOUS DISEASES
Tao Xie, Junyong Chen, Shuangshuang Wang, Qinghuan Zhang, Weiling Xia, Shiya Su, Xuehua Lin, Fengqiu Yang, Jian Deng, Xiaobin Li, Wen Su, Wenjun Ni
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Abstract

Purpose: The Gram-negative bacterium Aeromonas caviae is an important opportunistic facultative anaerobic pathogen. In the present study, we aimed to elucidate the whole-genome sequence of the multidrug-resistant (MDR) A. caviae strain AC1520, detailing its acquired antibiotic resistance genes (ARGs) and their genetic elements. Patients and Methods: The A. caviae strain AC1520 was isolated from a urine sample taken from a patient with urinary tract infection. Whole-genome sequencing was performed following strain identification and antimicrobial susceptibility testing. Overall, we identified ARGs, integrons, insertion sequences (IS), and transposons acquired by strain AC1520, systematically analyzing the genetic elements associated with these ARGs. Results: The A. caviae strain AC1520 contained a circular chromosome and a plasmid. Multilocus sequence typing revealed that this strain belonged to ST-1056. All ARGs within this strain were distributed on the circular chromosome. We identified two MDR regions: (1) IS common region 1 (ISCR1) and class 1 integron (IntI1) elements associated with aadA16, aac(6')-Ib-cr, catB3, qacE (two copies), sul1 (two copies), and blaPER-3; one gene cluster structure (IS6100-mphR(A)-mph(A)-mrx(A)-IS26); (2) Two IntI1 elements, linked to ant(2'')-Ia, blaOXA-10, aadA2b, aph(3'')-Ib, aph(6)-Id, ARR-2, aac(6')-Ib3, dfrA1, qacE, and sul1. Notably, these two MDR regions were not only present in A. caviae but also in other bacteria, such as Aeromonas hydrophila, Aeromonas media, and Edwardsiella tarda. Conclusion: The A. caviae strain AC1520 with two separate MDR regions and 20 ARGs, conferring resistance to aminoglycoside, fluoroquinolone, phenicol, sulfonamide, beta-lactam, macrolide, rifampicin, and trimethoprim, was identified in a hospital in China. Mobile genetic elements including TnAs1, ISCR1, ISAs25, IS6100, IS26, TnAs3, ISAs1, and Tn3, were found within the MDR region, which could play important roles in the global dissemination of these resistance genes.

尿路感染患者多药耐药鱼穴气单胞菌AC1520的全基因组测序分析
目的:革兰氏阴性气单胞菌是一种重要的条件兼性厌氧病原菌。在本研究中,我们旨在阐明多重耐药(MDR) A. caviae菌株AC1520的全基因组序列,详细描述其获得性抗生素耐药基因(ARGs)及其遗传元件。患者和方法:从1例尿路感染患者的尿液中分离出a . caviae菌株AC1520。菌株鉴定和药敏试验后进行全基因组测序。总体而言,我们鉴定了菌株AC1520获得的ARGs、整合子、插入序列(IS)和转座子,并系统地分析了与这些ARGs相关的遗传元件。结果:a . caviae菌株AC1520含有一个环状染色体和一个质粒。多位点序列分型表明该菌株属于ST-1056。该菌株的所有ARGs均分布在圆形染色体上。我们确定了两个MDR区域:(1)与aadA16、aac(6')-Ib-cr、catB3、qacE(两个拷贝)、sul1(两个拷贝)和blaPER-3相关的IS公共区域1 (ISCR1)和1类整合子(IntI1)元件;单基因簇结构(IS6100-mphR(A)-mph(A)-mrx(A)-IS26);(2)两个IntI1元素,连接ant(2’)-Ia、blaOXA-10、aadA2b、aph(3’)-Ib、aph(6’)-Id、ar -2、aac(6’)-Ib3、dfrA1、qacE和sul1。值得注意的是,这两个耐多药区域不仅存在于A. caviae中,也存在于其他细菌中,如嗜水气单胞菌、媒介气单胞菌和延迟爱德华菌。结论:在中国某医院鉴定出a. caviae菌株AC1520,具有2个独立耐多药区和20个ARGs,对氨基糖苷类、氟喹诺酮类、酚类、磺胺类、β -内酰胺类、大环内酯类、利福平类和甲氧苄啶类耐药。在MDR区域内发现了TnAs1、ISCR1、ISAs25、IS6100、IS26、TnAs3、ISAs1和Tn3等可移动遗传元件,这些遗传元件可能在这些抗性基因的全球传播中发挥重要作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Microbial drug resistance
Microbial drug resistance 医学-传染病学
CiteScore
6.00
自引率
3.80%
发文量
118
审稿时长
6-12 weeks
期刊介绍: Microbial Drug Resistance (MDR) is an international, peer-reviewed journal that covers the global spread and threat of multi-drug resistant clones of major pathogens that are widely documented in hospitals and the scientific community. The Journal addresses the serious challenges of trying to decipher the molecular mechanisms of drug resistance. MDR provides a multidisciplinary forum for peer-reviewed original publications as well as topical reviews and special reports. MDR coverage includes: Molecular biology of resistance mechanisms Virulence genes and disease Molecular epidemiology Drug design Infection control.
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