{"title":"Multiconfiguration Quantum Chemistry Calculations for Describing Photoinduced DNA Repair","authors":"K. Odintsov, T. Domratcheva","doi":"10.3103/S002713142570021X","DOIUrl":null,"url":null,"abstract":"<p>Electronic excitation energies and dipole moments have been computed using multiconfiguration CASSCF method further corrected to the second order perturbation theory XMCQDPT2 for a molecular-cluster modeling the active site of (6–4) photolyase containing а thymine–thymine (6–4) photoproduct. A set of models is considered in which the excitation energies change in a wide range since anionic phosphate groups of the photoproduct and cofactor flavin adenine dinucleotide (FADH<sup>–</sup>) are included in the models. The results demonstrate that an account for solvent effects using a PCM model reproduces the screening of the negative charges of the phosphate groups by the environment of the active site. The limits of the two-state model for estimating the electronic coupling matrix elements of the electron transfer reactions are investigated. The electronic coupling matrix elements may become overestimated due to the presence of a bright excited state in the flavin excitation spectrum.</p>","PeriodicalId":709,"journal":{"name":"Moscow University Chemistry Bulletin","volume":"80 4","pages":"214 - 222"},"PeriodicalIF":0.5000,"publicationDate":"2025-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Moscow University Chemistry Bulletin","FirstCategoryId":"1085","ListUrlMain":"https://link.springer.com/article/10.3103/S002713142570021X","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
Electronic excitation energies and dipole moments have been computed using multiconfiguration CASSCF method further corrected to the second order perturbation theory XMCQDPT2 for a molecular-cluster modeling the active site of (6–4) photolyase containing а thymine–thymine (6–4) photoproduct. A set of models is considered in which the excitation energies change in a wide range since anionic phosphate groups of the photoproduct and cofactor flavin adenine dinucleotide (FADH–) are included in the models. The results demonstrate that an account for solvent effects using a PCM model reproduces the screening of the negative charges of the phosphate groups by the environment of the active site. The limits of the two-state model for estimating the electronic coupling matrix elements of the electron transfer reactions are investigated. The electronic coupling matrix elements may become overestimated due to the presence of a bright excited state in the flavin excitation spectrum.
期刊介绍:
Moscow University Chemistry Bulletin is a journal that publishes review articles, original research articles, and short communications on various areas of basic and applied research in chemistry, including medical chemistry and pharmacology.