Multiconfiguration Quantum Chemistry Calculations for Describing Photoinduced DNA Repair

IF 0.5 Q4 CHEMISTRY, MULTIDISCIPLINARY
K. Odintsov, T. Domratcheva
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引用次数: 0

Abstract

Electronic excitation energies and dipole moments have been computed using multiconfiguration CASSCF method further corrected to the second order perturbation theory XMCQDPT2 for a molecular-cluster modeling the active site of (6–4) photolyase containing а thymine–thymine (6–4) photoproduct. A set of models is considered in which the excitation energies change in a wide range since anionic phosphate groups of the photoproduct and cofactor flavin adenine dinucleotide (FADH) are included in the models. The results demonstrate that an account for solvent effects using a PCM model reproduces the screening of the negative charges of the phosphate groups by the environment of the active site. The limits of the two-state model for estimating the electronic coupling matrix elements of the electron transfer reactions are investigated. The electronic coupling matrix elements may become overestimated due to the presence of a bright excited state in the flavin excitation spectrum.

Abstract Image

Abstract Image

描述光诱导DNA修复的多构型量子化学计算
用多构型CASSCF方法计算了含有胸腺嘧啶-胸腺嘧啶(6-4)光产物的(6-4)光解酶活性位点的电子激发能和偶极矩,并进一步修正了二阶微扰理论XMCQDPT2。由于光产物的阴离子磷酸基团和辅因子黄素腺嘌呤二核苷酸(FADH -)都包含在模型中,因此考虑了一组激发能在大范围内变化的模型。结果表明,使用PCM模型对溶剂效应的解释再现了活性位点环境对磷酸基负电荷的筛选。研究了估计电子转移反应的电子耦合矩阵元素的双态模型的局限性。由于黄素激发光谱中存在明亮的激发态,电子耦合矩阵元素可能会被高估。
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来源期刊
Moscow University Chemistry Bulletin
Moscow University Chemistry Bulletin CHEMISTRY, MULTIDISCIPLINARY-
CiteScore
1.30
自引率
14.30%
发文量
38
期刊介绍: Moscow University Chemistry Bulletin is a journal that publishes review articles, original research articles, and short communications on various areas of basic and applied research in chemistry, including medical chemistry and pharmacology.
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