Unveiling the molecular mechanism of Gi protein biased activation at mGlu2-mGlu4 heterodimers through Gaussian accelerated molecular dynamics simulations.
{"title":"Unveiling the molecular mechanism of G<sub>i</sub> protein biased activation at mGlu<sub>2</sub>-mGlu<sub>4</sub> heterodimers through Gaussian accelerated molecular dynamics simulations.","authors":"Baoyu He, Longfei Mao, Xiaojie Jin, Hongliang Duan, Jingjing Guo","doi":"10.1002/pro.70277","DOIUrl":null,"url":null,"abstract":"<p><p>Metabotropic glutamate (mGlu) receptors play a crucial role in synaptic transmission through homodimeric or heterodimeric assemblies. Despite their dimeric nature, only one subunit within the mGlu dimer engages with G proteins during activation, and the biased activation can be further controlled by allosteric modulators. Considering the related molecular mechanisms remain elusive, we employed Gaussian accelerated molecular dynamics (GaMD) simulations to investigate the regulated mechanisms in mGlu<sub>2</sub>-mGlu<sub>4</sub> heterodimers. Our results demonstrate that the G<sub>i</sub> protein exhibits a higher binding affinity for mGlu<sub>4</sub> compared to mGlu<sub>2</sub> within the mGlu<sub>2</sub>-mGlu<sub>4</sub> heterodimer. Meanwhile, when the positive allosteric modulator (PAM) binds to G<sub>i</sub>-coupled subunits-whether mGlu<sub>2</sub> or mGlu<sub>4</sub>-it can enhance the binding affinity between the G<sub>i</sub> protein and the subunits of the mGlu<sub>2</sub>-mGlu<sub>4</sub> heterodimer. However, if the PAM binds to mGlu<sub>2</sub> while the G<sub>i</sub> protein is coupled to mGlu<sub>4</sub>, the binding affinity may be reduced. Additionally, our results highlight the crucial role of the ICL2 region and the perturbation of the residue-residue coupling network involved in the regulatory pathways in mediating the PAM-induced modulation of G<sub>i</sub> protein preference. In conclusion, these findings provide novel insights into the molecular mechanism underpinning the G<sub>i</sub> protein's preference for mGlu<sub>4</sub> within the mGlu<sub>2</sub>-mGlu<sub>4</sub> heterodimers and the regulatory influence of PAM on G<sub>i</sub> protein binding, advancing our understanding of their functional mechanisms.</p>","PeriodicalId":20761,"journal":{"name":"Protein Science","volume":"34 9","pages":"e70277"},"PeriodicalIF":5.2000,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12359205/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Protein Science","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1002/pro.70277","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Metabotropic glutamate (mGlu) receptors play a crucial role in synaptic transmission through homodimeric or heterodimeric assemblies. Despite their dimeric nature, only one subunit within the mGlu dimer engages with G proteins during activation, and the biased activation can be further controlled by allosteric modulators. Considering the related molecular mechanisms remain elusive, we employed Gaussian accelerated molecular dynamics (GaMD) simulations to investigate the regulated mechanisms in mGlu2-mGlu4 heterodimers. Our results demonstrate that the Gi protein exhibits a higher binding affinity for mGlu4 compared to mGlu2 within the mGlu2-mGlu4 heterodimer. Meanwhile, when the positive allosteric modulator (PAM) binds to Gi-coupled subunits-whether mGlu2 or mGlu4-it can enhance the binding affinity between the Gi protein and the subunits of the mGlu2-mGlu4 heterodimer. However, if the PAM binds to mGlu2 while the Gi protein is coupled to mGlu4, the binding affinity may be reduced. Additionally, our results highlight the crucial role of the ICL2 region and the perturbation of the residue-residue coupling network involved in the regulatory pathways in mediating the PAM-induced modulation of Gi protein preference. In conclusion, these findings provide novel insights into the molecular mechanism underpinning the Gi protein's preference for mGlu4 within the mGlu2-mGlu4 heterodimers and the regulatory influence of PAM on Gi protein binding, advancing our understanding of their functional mechanisms.
期刊介绍:
Protein Science, the flagship journal of The Protein Society, is a publication that focuses on advancing fundamental knowledge in the field of protein molecules. The journal welcomes original reports and review articles that contribute to our understanding of protein function, structure, folding, design, and evolution.
Additionally, Protein Science encourages papers that explore the applications of protein science in various areas such as therapeutics, protein-based biomaterials, bionanotechnology, synthetic biology, and bioelectronics.
The journal accepts manuscript submissions in any suitable format for review, with the requirement of converting the manuscript to journal-style format only upon acceptance for publication.
Protein Science is indexed and abstracted in numerous databases, including the Agricultural & Environmental Science Database (ProQuest), Biological Science Database (ProQuest), CAS: Chemical Abstracts Service (ACS), Embase (Elsevier), Health & Medical Collection (ProQuest), Health Research Premium Collection (ProQuest), Materials Science & Engineering Database (ProQuest), MEDLINE/PubMed (NLM), Natural Science Collection (ProQuest), and SciTech Premium Collection (ProQuest).