Unveiling the molecular mechanism of Gi protein biased activation at mGlu2-mGlu4 heterodimers through Gaussian accelerated molecular dynamics simulations.

IF 5.2 3区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Protein Science Pub Date : 2025-09-01 DOI:10.1002/pro.70277
Baoyu He, Longfei Mao, Xiaojie Jin, Hongliang Duan, Jingjing Guo
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引用次数: 0

Abstract

Metabotropic glutamate (mGlu) receptors play a crucial role in synaptic transmission through homodimeric or heterodimeric assemblies. Despite their dimeric nature, only one subunit within the mGlu dimer engages with G proteins during activation, and the biased activation can be further controlled by allosteric modulators. Considering the related molecular mechanisms remain elusive, we employed Gaussian accelerated molecular dynamics (GaMD) simulations to investigate the regulated mechanisms in mGlu2-mGlu4 heterodimers. Our results demonstrate that the Gi protein exhibits a higher binding affinity for mGlu4 compared to mGlu2 within the mGlu2-mGlu4 heterodimer. Meanwhile, when the positive allosteric modulator (PAM) binds to Gi-coupled subunits-whether mGlu2 or mGlu4-it can enhance the binding affinity between the Gi protein and the subunits of the mGlu2-mGlu4 heterodimer. However, if the PAM binds to mGlu2 while the Gi protein is coupled to mGlu4, the binding affinity may be reduced. Additionally, our results highlight the crucial role of the ICL2 region and the perturbation of the residue-residue coupling network involved in the regulatory pathways in mediating the PAM-induced modulation of Gi protein preference. In conclusion, these findings provide novel insights into the molecular mechanism underpinning the Gi protein's preference for mGlu4 within the mGlu2-mGlu4 heterodimers and the regulatory influence of PAM on Gi protein binding, advancing our understanding of their functional mechanisms.

通过高斯加速分子动力学模拟揭示mGlu2-mGlu4异源二聚体中Gi蛋白偏态活化的分子机制。
代谢性谷氨酸(mGlu)受体在同二聚体或异二聚体的突触传递中起着至关重要的作用。尽管它们是二聚体,但在激活过程中,mGlu二聚体中只有一个亚基与G蛋白结合,并且这种偏态激活可以通过变构调节剂进一步控制。考虑到相关的分子机制尚不清楚,我们采用高斯加速分子动力学(GaMD)模拟研究了mGlu2-mGlu4异源二聚体的调控机制。我们的研究结果表明,在mGlu2-mGlu4异源二聚体中,Gi蛋白对mGlu4的结合亲和力比mGlu2高。同时,当阳性变构调节剂(PAM)与Gi偶联亚基(无论是mGlu2还是mglu4)结合时,可以增强Gi蛋白与mGlu2- mglu4异源二聚体亚基之间的结合亲和力。然而,如果PAM与mGlu2结合,而Gi蛋白与mGlu4偶联,则结合亲和力可能降低。此外,我们的研究结果强调了ICL2区域和残基-残基偶联网络的扰动在介导pam诱导的Gi蛋白偏好调节途径中的关键作用。总之,这些发现为揭示mGlu2-mGlu4异源二聚体中Gi蛋白偏好mGlu4的分子机制以及PAM对Gi蛋白结合的调控作用提供了新的见解,促进了我们对Gi蛋白功能机制的理解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Protein Science
Protein Science 生物-生化与分子生物学
CiteScore
12.40
自引率
1.20%
发文量
246
审稿时长
1 months
期刊介绍: Protein Science, the flagship journal of The Protein Society, is a publication that focuses on advancing fundamental knowledge in the field of protein molecules. The journal welcomes original reports and review articles that contribute to our understanding of protein function, structure, folding, design, and evolution. Additionally, Protein Science encourages papers that explore the applications of protein science in various areas such as therapeutics, protein-based biomaterials, bionanotechnology, synthetic biology, and bioelectronics. The journal accepts manuscript submissions in any suitable format for review, with the requirement of converting the manuscript to journal-style format only upon acceptance for publication. Protein Science is indexed and abstracted in numerous databases, including the Agricultural & Environmental Science Database (ProQuest), Biological Science Database (ProQuest), CAS: Chemical Abstracts Service (ACS), Embase (Elsevier), Health & Medical Collection (ProQuest), Health Research Premium Collection (ProQuest), Materials Science & Engineering Database (ProQuest), MEDLINE/PubMed (NLM), Natural Science Collection (ProQuest), and SciTech Premium Collection (ProQuest).
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