A Bayesian Basket Trial Design Using Local Power Prior

IF 1.8 3区 生物学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Haiming Zhou, Rex Shen, Sutan Wu, Philip He
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引用次数: 0

Abstract

In recent years, basket trials, which allow the evaluation of an experimental therapy across multiple tumor types within a single protocol, have gained prominence in early-phase oncology development. Unlike traditional trials, which evaluate each tumor type separately and often face challenges with limited sample sizes, basket trials offer the advantage of borrowing information across various tumor types to enhance statistical power. However, a key challenge in designing basket trials is determining the appropriate extent of information borrowing while maintaining an acceptable type I error rate control. In this paper, we propose a novel three-component local power prior (local-PP) framework that introduces a dynamic and flexible approach to information borrowing. The framework consists of three components: global borrowing control, pairwise similarity assessments, and a borrowing threshold, allowing for tailored and interpretable borrowing across heterogeneous tumor types. Unlike many existing Bayesian methods that rely on computationally intensive Markov chain Monte Carlo (MCMC) sampling, the proposed approach provides a closed-form solution, significantly reducing computation time in large-scale simulations for evaluating operating characteristics. Extensive simulations demonstrate that the proposed local-PP framework performs comparably to more complex methods while significantly shortening computation time.

基于局部功率先验的贝叶斯篮试验设计
近年来,篮子试验(basket trials)在早期肿瘤发展中获得了突出地位,篮子试验允许在单一方案中对多种肿瘤类型的实验性治疗进行评估。传统的试验分别评估每种肿瘤类型,并且常常面临样本量有限的挑战,而篮子试验的优势在于可以借鉴不同肿瘤类型的信息,以增强统计能力。然而,设计篮子试验的一个关键挑战是在保持可接受的第一类错误率控制的同时确定适当的信息借用程度。在本文中,我们提出了一个新颖的三组分局部权力优先(local- pp)框架,该框架引入了一种动态和灵活的信息借用方法。该框架由三个部分组成:全局借用控制、两两相似性评估和借用阈值,允许在异质肿瘤类型之间进行定制和可解释的借用。与许多现有的贝叶斯方法依赖于计算密集型的马尔可夫链蒙特卡罗(MCMC)采样不同,该方法提供了一个封闭形式的解决方案,大大减少了大规模模拟评估操作特性的计算时间。大量的仿真表明,所提出的局部- pp框架的性能与更复杂的方法相当,同时显著缩短了计算时间。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Biometrical Journal
Biometrical Journal 生物-数学与计算生物学
CiteScore
3.20
自引率
5.90%
发文量
119
审稿时长
6-12 weeks
期刊介绍: Biometrical Journal publishes papers on statistical methods and their applications in life sciences including medicine, environmental sciences and agriculture. Methodological developments should be motivated by an interesting and relevant problem from these areas. Ideally the manuscript should include a description of the problem and a section detailing the application of the new methodology to the problem. Case studies, review articles and letters to the editors are also welcome. Papers containing only extensive mathematical theory are not suitable for publication in Biometrical Journal.
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