Molecular epidemiology of measles virus re-emergence in Osaka Prefecture, Japan, after lifting COVID-19 pandemic travel restrictions.

Abstract

After lifting travel bans imposed during the coronavirus 2019 pandemic, the number of reported measles cases in Japan started rising, culminating in 11 cases in Osaka Prefecture in 2024. We investigated the molecular epidemiology of these cases using 450 nucleotides of the C-terminal region of the nucleoprotein gene (N-450) and the noncoding region located between the matrix and fusion protein genes (MF-NCR). N-450 analysis revealed eight cases of genotype D8 and three of B3. Seven of the D8 cases were closely related to strains from Central Asia and Europe, harboring mutations in the primer binding region targeted by real-time PCR assays for measles virus. The remaining D8 case matched a strain from Thailand. All three B3 cases were identical to the strain detected in Vietnam in 2024. MF-NCR analysis of D8 cases revealed similar trends to those observed in the N-450 analysis. However, the B3 viruses from Vietnam differed by several bases from the closest related sequence and included a 6-base insertion. Given the resurgence of measles in Vietnam since 2024, the potential risk of continuous measles importation remains. Attention should focus on measles surveillance under circumstances of increased international human interactions, specifically the Exposition 2025 Osaka, Kansai in Japan.