Comprehensive single-cell transcriptomic analysis reveals fibroblast subpopulations and the prognostic association of COMT in prostate cancer progression, COMT , COMT.

IF 3.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Weimin Shan, Bo Guan, Weiwei Ma, Runzhe Fan, Di Cui, Zongyao Hao
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Abstract

Prostate cancer is a heterogeneous malignancy with a complex tumor microenvironment (TME) composed of various cellular components, including fibroblasts. These fibroblasts, particularly cancer-associated fibroblasts (CAFs), are crucial in shaping the TME and influencing cancer progression. Catechol-O-methyltransferase (COMT), a key enzyme involved in the metabolism of catecholamines and oxidative stress regulation, has recently been implicated in cancer biology. This study aims to explore the molecular landscape of fibroblasts in prostate cancer and evaluate the prognostic significance of COMT expression in this context. We performed an integrated single-cell RNA sequencing (scRNA-seq) analysis on prostate cancer samples from Gene Expression Omnibus (GEO) databases. Fibroblast subpopulations were identified through clustering, and functional gene signatures for each subgroup were characterized. Prognostic analysis was carried out using univariate and multivariate Cox regression to identify genes associated with patient survival, culminating in a risk score model using data from the Cancer Genome Atlas (TCGA). Additionally, immunofluorescence assays were used to validate COMT expression in tumor-derived fibroblasts. Our single-cell sequencing analysis revealed three distinct fibroblast subpopulations, each with unique gene expression profiles linked to extracellular matrix remodeling, immune modulation, and cellular stress responses. COMT was identified as a key gene in tumor-derived fibroblasts, with its expression significantly higher in tumor samples compared to normal tissues. The risk score model, based on COMT and other fibroblast-associated genes (QSOX1, TAX1BP3, CCDC66, MTCH1, ARL2BP), successfully stratified patients into high-risk and low-risk groups, with higher risk scores correlating with poorer survival outcomes. Immunostaining confirmed the overexpression of COMT in tumor-derived fibroblasts, consistent with bioinformatics analysis. This study underscores the significant role of fibroblasts, particularly CAFs, in prostate cancer progression. Our findings highlight COMT as a critical regulator of the tumor microenvironment and a promising prognostic marker. The integration of single-cell RNA-seq with clinical data offers new insights into fibroblast heterogeneity and the potential for COMT as a therapeutic target in prostate cancer. Further research is needed to validate these findings and explore the mechanistic role of COMT in prostate cancer progression and therapeutic resistance.

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综合单细胞转录组学分析揭示了成纤维细胞亚群和COMT在前列腺癌进展中的预后关联。
前列腺癌是一种异质性恶性肿瘤,其复杂的肿瘤微环境(TME)由多种细胞成分组成,包括成纤维细胞。这些成纤维细胞,特别是癌症相关成纤维细胞(CAFs),在形成TME和影响癌症进展中至关重要。儿茶酚- o -甲基转移酶(COMT)是一种参与儿茶酚胺代谢和氧化应激调节的关键酶,最近被认为与癌症生物学有关。本研究旨在探讨成纤维细胞在前列腺癌中的分子格局,并在此背景下评估COMT表达的预后意义。我们对来自Gene Expression Omnibus (GEO)数据库的前列腺癌样本进行了综合单细胞RNA测序(scRNA-seq)分析。通过聚类鉴定成纤维细胞亚群,并对每个亚群的功能基因特征进行了表征。使用单变量和多变量Cox回归进行预后分析,以确定与患者生存相关的基因,最终使用来自癌症基因组图谱(TCGA)的数据建立风险评分模型。此外,利用免疫荧光法验证COMT在肿瘤源性成纤维细胞中的表达。我们的单细胞测序分析揭示了三个不同的成纤维细胞亚群,每个亚群都具有与细胞外基质重塑、免疫调节和细胞应激反应相关的独特基因表达谱。COMT被认为是肿瘤源性成纤维细胞的关键基因,其在肿瘤样本中的表达明显高于正常组织。基于COMT和其他成纤维细胞相关基因(QSOX1、TAX1BP3、CCDC66、MTCH1、ARL2BP)的风险评分模型成功地将患者分为高风险和低风险组,风险评分越高,生存结果越差。免疫染色证实COMT在肿瘤源性成纤维细胞中过表达,与生物信息学分析一致。这项研究强调了成纤维细胞,特别是CAFs在前列腺癌进展中的重要作用。我们的研究结果强调COMT是肿瘤微环境的关键调节因子和有希望的预后标记物。单细胞RNA-seq与临床数据的整合为成纤维细胞异质性和COMT作为前列腺癌治疗靶点的潜力提供了新的见解。需要进一步的研究来验证这些发现,并探索COMT在前列腺癌进展和治疗耐药中的机制作用。
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来源期刊
Scientific Reports
Scientific Reports Natural Science Disciplines-
CiteScore
7.50
自引率
4.30%
发文量
19567
审稿时长
3.9 months
期刊介绍: We publish original research from all areas of the natural sciences, psychology, medicine and engineering. You can learn more about what we publish by browsing our specific scientific subject areas below or explore Scientific Reports by browsing all articles and collections. Scientific Reports has a 2-year impact factor: 4.380 (2021), and is the 6th most-cited journal in the world, with more than 540,000 citations in 2020 (Clarivate Analytics, 2021). •Engineering Engineering covers all aspects of engineering, technology, and applied science. It plays a crucial role in the development of technologies to address some of the world''s biggest challenges, helping to save lives and improve the way we live. •Physical sciences Physical sciences are those academic disciplines that aim to uncover the underlying laws of nature — often written in the language of mathematics. It is a collective term for areas of study including astronomy, chemistry, materials science and physics. •Earth and environmental sciences Earth and environmental sciences cover all aspects of Earth and planetary science and broadly encompass solid Earth processes, surface and atmospheric dynamics, Earth system history, climate and climate change, marine and freshwater systems, and ecology. It also considers the interactions between humans and these systems. •Biological sciences Biological sciences encompass all the divisions of natural sciences examining various aspects of vital processes. The concept includes anatomy, physiology, cell biology, biochemistry and biophysics, and covers all organisms from microorganisms, animals to plants. •Health sciences The health sciences study health, disease and healthcare. This field of study aims to develop knowledge, interventions and technology for use in healthcare to improve the treatment of patients.
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