SNP variation landscape of BMP15 gene from 75 global sheep breeds and their genetic effect on lambing traits.

IF 2.9 2区 农林科学 Q1 VETERINARY SCIENCES
Frontiers in Veterinary Science Pub Date : 2025-07-14 eCollection Date: 2025-01-01 DOI:10.3389/fvets.2025.1612263
Peiyao Liu, Chunna Cao, Xiangding Wang, Kewei Li, Ebadu Areb, Ran Li, Qingfeng Zhang, Chuanying Pan, Xianyong Lan
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引用次数: 0

Abstract

Introduction: Bone morphogenetic protein 15 (BMP15) is a pivotal regulator of reproductive performance. This study aimed to investigate genetic variations in the sheep BMP15 gene and their role in lambing traits.

Methods: Whole-genome sequencing was performed on 2,409 individuals from 75 global sheep breeds to identify functional variations in BMP15. Variant annotation, protein structure prediction, haplotype analysis, and association studies with lambing traits were conducted.

Results: 139 SNPs were detected, including 10 exonic variants (6 missense, 2 synonymous, 2 premature stop codons), 9 of which were novel. The high-frequency missense mutation g.54284258A>G (L251P) showed predicted localized conformational changes. Low-frequency stop-gain mutations (e.g., g.54284551C>T) were rare (<0.005%) in domestic breeds. Haplotype H6 (AAAA) predominated in domestic breeds (48.4%), diverging significantly from the wild ancestral H1 (AAGA), indicating artificial selection. The g.54284258A>G variant was significantly associated with live lamb number at first (p < 0.01) and second parity (p  < 0.05). AG genotypes had more live lambs than AA (1.29 vs. 1.12; p < 0.01). No significant associations were found with total lambing number, lamb survival rate, stillbirth count, or stillbirth rate.

Discussion: BMP15 exhibits substantial genetic variability shaped by selection. The g.54284258A>G variant significantly influences live lamb numbers and may serve as a genetic marker for improving this trait in sheep breeding programs, though its impact is parity-specific and unrelated to stillbirth or overall survival metrics.

全球75个绵羊品种BMP15基因SNP变异格局及其对羔羊性状的遗传效应
骨形态发生蛋白15 (Bone morphogenetic protein 15, BMP15)是生殖性能的关键调控因子。本研究旨在探讨绵羊BMP15基因的遗传变异及其在羔羊性状中的作用。方法:对来自全球75个绵羊品种的2409只羊进行全基因组测序,以确定BMP15的功能变异。进行了变异注释、蛋白质结构预测、单倍型分析以及与羔羊性状的关联研究。结果:共检测到139个snp,其中外显子变异10个(错义6个,同义2个,过早终止密码子2个),其中9个为新变异。高频错义突变G . 54284258a >G (L251P)显示出预测的局部构象变化。低频率停止增益突变(如G . 54284551c >T)是罕见的(G变异与首胎活羔数(p < 0.01)和次胎活羔数(p < 0.05)显著相关)。AG基因型比AA型活羔多(1.29比1.12; p < 0.01)。未发现总羔数、羔羊存活率、死产数或死产率有显著相关性。讨论:BMP15表现出由选择形成的大量遗传变异性。G . 54284258a >g变异显著影响活羊数量,并可能在绵羊育种计划中作为改善这一性状的遗传标记,尽管其影响是胎次特异性的,与死胎或总体存活指标无关。
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来源期刊
Frontiers in Veterinary Science
Frontiers in Veterinary Science Veterinary-General Veterinary
CiteScore
4.80
自引率
9.40%
发文量
1870
审稿时长
14 weeks
期刊介绍: Frontiers in Veterinary Science is a global, peer-reviewed, Open Access journal that bridges animal and human health, brings a comparative approach to medical and surgical challenges, and advances innovative biotechnology and therapy. Veterinary research today is interdisciplinary, collaborative, and socially relevant, transforming how we understand and investigate animal health and disease. Fundamental research in emerging infectious diseases, predictive genomics, stem cell therapy, and translational modelling is grounded within the integrative social context of public and environmental health, wildlife conservation, novel biomarkers, societal well-being, and cutting-edge clinical practice and specialization. Frontiers in Veterinary Science brings a 21st-century approach—networked, collaborative, and Open Access—to communicate this progress and innovation to both the specialist and to the wider audience of readers in the field. Frontiers in Veterinary Science publishes articles on outstanding discoveries across a wide spectrum of translational, foundational, and clinical research. The journal''s mission is to bring all relevant veterinary sciences together on a single platform with the goal of improving animal and human health.
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