Integrating chemical artificial intelligence and cognitive computing for predictive analysis of biological pathways: a case for intrinsically disordered proteins.

IF 3.7 Q1 BIOPHYSICS
Biophysical reviews Pub Date : 2025-02-15 eCollection Date: 2025-06-01 DOI:10.1007/s12551-025-01286-x
Orkid Coskuner-Weber, Pier Luigi Gentili, Vladimir N Uversky
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引用次数: 0

Abstract

Incorporating biological molecular interactions into cognitive computing through chemical artificial intelligence (AI) presents a transformative approach with far-reaching implications for various fields, such as protein engineering, drug discovery, bioinformatics, synthetic biology, and unconventional computing. Cognitive computing, designed to emulate human thought processes and enhance decision-making, utilizes technologies, such as machine learning, natural language processing, and speech recognition for better human-system interactions. Despite advancements, the integration of biological processes with cognitive computing remains fraught with challenges, particularly due to the complexity and scale of biological data. Here, we explore the possible benefits of connecting cognitive computing with biological knowledge, including more precise models of protein interactions, gene regulation, and metabolic pathways, which could lead to personalized treatments and early disease detection. Furthermore, we discuss the intersection of cognitive computing and biophysical research techniques, examining how analogies from neuroscience-like synaptic communication and neural plasticity-can inform the development of neuromorphic chips and enhance predictive models. Additionally, the study delves into intrinsically disordered proteins (IDPs) and their crucial roles in brain function and information processing. These insights are pivotal for advancing neuroinformatics and creating more adaptive, context-aware cognitive computing algorithms. By leveraging biophysical investigations and the unique properties of IDPs, the research aims to bridge the gap between the biological processes and their computational analogs, proposing novel methods, such as chemical AI implemented in liquid solutions as promising avenues for future advancements.

整合化学人工智能和认知计算用于生物途径的预测分析:一个内在无序蛋白质的案例。
通过化学人工智能(AI)将生物分子相互作用纳入认知计算,为蛋白质工程、药物发现、生物信息学、合成生物学和非常规计算等各个领域提供了一种具有深远影响的变革性方法。认知计算旨在模拟人类思维过程并增强决策能力,它利用机器学习、自然语言处理和语音识别等技术来实现更好的人类系统交互。尽管取得了进步,但生物过程与认知计算的整合仍然充满挑战,特别是由于生物数据的复杂性和规模。在这里,我们探讨了将认知计算与生物学知识联系起来的可能好处,包括更精确的蛋白质相互作用模型、基因调控和代谢途径,这可能导致个性化治疗和早期疾病检测。此外,我们还讨论了认知计算和生物物理研究技术的交叉,研究了神经科学中的类比(如突触通信和神经可塑性)如何为神经形态芯片的开发提供信息并增强预测模型。此外,该研究还深入研究了内在无序蛋白(IDPs)及其在大脑功能和信息处理中的关键作用。这些见解对于推进神经信息学和创造更具适应性、上下文感知的认知计算算法至关重要。通过利用生物物理研究和IDPs的独特特性,该研究旨在弥合生物过程与其计算类似物之间的差距,提出新颖的方法,例如在液体溶液中实施的化学人工智能,作为未来进步的有希望的途径。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Biophysical reviews
Biophysical reviews Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
8.90
自引率
0.00%
发文量
93
期刊介绍: Biophysical Reviews aims to publish critical and timely reviews from key figures in the field of biophysics. The bulk of the reviews that are currently published are from invited authors, but the journal is also open for non-solicited reviews. Interested authors are encouraged to discuss the possibility of contributing a review with the Editor-in-Chief prior to submission. Through publishing reviews on biophysics, the editors of the journal hope to illustrate the great power and potential of physical techniques in the biological sciences, they aim to stimulate the discussion and promote further research and would like to educate and enthuse basic researcher scientists and students of biophysics. Biophysical Reviews covers the entire field of biophysics, generally defined as the science of describing and defining biological phenomenon using the concepts and the techniques of physics. This includes but is not limited by such areas as: - Bioinformatics - Biophysical methods and instrumentation - Medical biophysics - Biosystems - Cell biophysics and organization - Macromolecules: dynamics, structures and interactions - Single molecule biophysics - Membrane biophysics, channels and transportation
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