Species classification of microalgae using a CNN-based deep learning approach under optimal cultivation conditions

IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Gokce Kendirlioglu Simsek , Merve Ertargin , Laura Pezzolesi , Rossella Pistocchi , Ozal Yildirim , A. Kadri Cetin
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引用次数: 0

Abstract

Microalgae possess significant potential in a wide range of applications due to their valuable bioactive compounds. They are utilized in biofuel production to reduce dependence on fossil fuels, in wastewater treatment for the biological removal of heavy metals and pollutants, in carbon capture for mitigating climate change, and in the pharmaceutical and nutraceutical industries as supplements. As their applications expand, the accurate and efficient identification of microalgal species becomes increasingly important. Traditional classification methods are time-consuming and rely heavily on expert knowledge. The main aim of this study is to develop a reliable, fast, and expert-independent deep learning-based approach for the classification of microalgae species using microscopic images. In this context, deep learning techniques, specifically convolutional neural network (CNN)-based models were employed to classify microalgal species. Four widely used pre-trained CNN architectures (ResNet152, DenseNet201, MobileNetV2, and EfficientNetB0), along with a custom-designed CNN, were implemented. The models were trained and tested on a labeled dataset consisting of microscopic images of Chlorella vulgaris, Scenedesmus acutus, and Haematococcus pluvialis. The classification models achieved accuracy rates ranging from 96.87 % (Custom CNN) to 100 % (DenseNet201), demonstrating the potential of CNN-based approaches in automating and improving microalgae species identification.
最优培养条件下基于cnn深度学习的微藻种类分类
微藻具有丰富的生物活性成分,具有广阔的应用前景。它们用于生物燃料生产以减少对化石燃料的依赖,用于废水处理以生物去除重金属和污染物,用于碳捕获以减缓气候变化,以及用于制药和营养保健品工业作为补充。随着微藻应用范围的扩大,准确、高效地鉴定微藻种类变得越来越重要。传统的分类方法耗时且严重依赖专家知识。本研究的主要目的是开发一种可靠、快速、独立于专家的基于深度学习的方法,用于利用显微图像对微藻物种进行分类。在这种情况下,深度学习技术,特别是基于卷积神经网络(CNN)的模型被用于对微藻物种进行分类。实现了四种广泛使用的预训练CNN架构(ResNet152, DenseNet201, MobileNetV2和EfficientNetB0),以及定制设计的CNN。这些模型在一个标记的数据集上进行训练和测试,该数据集包括小球藻(Chlorella vulgaris)、尖景藻(Scenedesmus acutus)和雨生红球菌(Haematococcus pluvialis)的显微图像。分类模型的准确率从96.87 % (Custom CNN)到100 % (DenseNet201)不等,证明了基于CNN的方法在自动化和改进微藻物种识别方面的潜力。
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来源期刊
Biochemical Engineering Journal
Biochemical Engineering Journal 工程技术-工程:化工
CiteScore
7.10
自引率
5.10%
发文量
380
审稿时长
34 days
期刊介绍: The Biochemical Engineering Journal aims to promote progress in the crucial chemical engineering aspects of the development of biological processes associated with everything from raw materials preparation to product recovery relevant to industries as diverse as medical/healthcare, industrial biotechnology, and environmental biotechnology. The Journal welcomes full length original research papers, short communications, and review papers* in the following research fields: Biocatalysis (enzyme or microbial) and biotransformations, including immobilized biocatalyst preparation and kinetics Biosensors and Biodevices including biofabrication and novel fuel cell development Bioseparations including scale-up and protein refolding/renaturation Environmental Bioengineering including bioconversion, bioremediation, and microbial fuel cells Bioreactor Systems including characterization, optimization and scale-up Bioresources and Biorefinery Engineering including biomass conversion, biofuels, bioenergy, and optimization Industrial Biotechnology including specialty chemicals, platform chemicals and neutraceuticals Biomaterials and Tissue Engineering including bioartificial organs, cell encapsulation, and controlled release Cell Culture Engineering (plant, animal or insect cells) including viral vectors, monoclonal antibodies, recombinant proteins, vaccines, and secondary metabolites Cell Therapies and Stem Cells including pluripotent, mesenchymal and hematopoietic stem cells; immunotherapies; tissue-specific differentiation; and cryopreservation Metabolic Engineering, Systems and Synthetic Biology including OMICS, bioinformatics, in silico biology, and metabolic flux analysis Protein Engineering including enzyme engineering and directed evolution.
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