Machine learning approaches for transition state prediction

IF 11.6 Q1 CHEMISTRY, PHYSICAL
Xingyu Wang, Yu Mao, Ziyun Wang
{"title":"Machine learning approaches for transition state prediction","authors":"Xingyu Wang, Yu Mao, Ziyun Wang","doi":"10.1016/j.checat.2025.101458","DOIUrl":null,"url":null,"abstract":"Searching for a transition state (TS) is crucial in understanding chemical reaction mechanisms and kinetics. While traditional computational methods, including single-ended and double-ended approaches, have provided valuable insights, they face significant computational cost and scalability limitations. This review comprehensively examines conventional computational approaches and the rapidly emerging machine learning (ML) methods for TS searching, highlighting the significant acceleration in ML method development since 2020. We first analyze traditional computational methods, discussing their theoretical foundations and practical limitations. We then systematically review available TS datasets that enable ML applications. The review explores the evolution of ML approaches from traditional methods like random forest and kernel ridge regression to advanced architectures such as graph neural networks, tensor field networks, and generative models. We examine current challenges, including data scarcity, computational constraints, and validation standards, while highlighting promising future directions. This comprehensive analysis provides insights into the field’s current state and outlines potential pathways for advancing TS searching methodologies.","PeriodicalId":53121,"journal":{"name":"Chem Catalysis","volume":"32 1","pages":""},"PeriodicalIF":11.6000,"publicationDate":"2025-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chem Catalysis","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1016/j.checat.2025.101458","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Searching for a transition state (TS) is crucial in understanding chemical reaction mechanisms and kinetics. While traditional computational methods, including single-ended and double-ended approaches, have provided valuable insights, they face significant computational cost and scalability limitations. This review comprehensively examines conventional computational approaches and the rapidly emerging machine learning (ML) methods for TS searching, highlighting the significant acceleration in ML method development since 2020. We first analyze traditional computational methods, discussing their theoretical foundations and practical limitations. We then systematically review available TS datasets that enable ML applications. The review explores the evolution of ML approaches from traditional methods like random forest and kernel ridge regression to advanced architectures such as graph neural networks, tensor field networks, and generative models. We examine current challenges, including data scarcity, computational constraints, and validation standards, while highlighting promising future directions. This comprehensive analysis provides insights into the field’s current state and outlines potential pathways for advancing TS searching methodologies.
过渡状态预测的机器学习方法
寻找过渡态(TS)对于理解化学反应机理和动力学至关重要。虽然传统的计算方法,包括单端和双端方法,提供了有价值的见解,但它们面临着巨大的计算成本和可扩展性限制。本文全面考察了用于TS搜索的传统计算方法和快速出现的机器学习(ML)方法,强调了自2020年以来ML方法发展的显着加速。本文首先分析了传统的计算方法,讨论了它们的理论基础和实践局限性。然后,我们系统地审查可用的TS数据集,使机器学习应用程序。这篇综述探讨了机器学习方法的演变,从随机森林和核脊回归等传统方法到高级架构,如图神经网络、张量场网络和生成模型。我们研究了当前的挑战,包括数据稀缺、计算约束和验证标准,同时强调了有希望的未来方向。这一全面的分析提供了对该领域现状的见解,并概述了推进TS搜索方法的潜在途径。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
CiteScore
10.50
自引率
6.40%
发文量
0
期刊介绍: Chem Catalysis is a monthly journal that publishes innovative research on fundamental and applied catalysis, providing a platform for researchers across chemistry, chemical engineering, and related fields. It serves as a premier resource for scientists and engineers in academia and industry, covering heterogeneous, homogeneous, and biocatalysis. Emphasizing transformative methods and technologies, the journal aims to advance understanding, introduce novel catalysts, and connect fundamental insights to real-world applications for societal benefit.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信