Immunosenescence-Related Gene MAFF is Involved in Immune Regulation and Malignant Progression in Pancreatic Adenocarcinoma.

IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS
Fenglin Zhang, Kexin Liu, Mengfan Ao, Jiangang Zhao, Xinghe Liao, Ping Li, Hao Chen
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引用次数: 0

Abstract

Immunosenescence has lately become a focal point in oncology investigations. Nevertheless, its significance in pancreatic adenocarcinoma (PAAD) remains to be elucidated. This research sought to examine the predictive value and treatment implications of immunosenescence-related genes in PAAD. We use the public datasets from TCGA and GEO to extract clinicopathological factors and RNA-sequencing data. Differentially expressed genes (DEGs) were ascertained, and then molecular subtypes were classified by consensus clustering. Functional enrichment analysis using KEGG and GO, GSEA, survival analysis, and the design of an immunosenescence-linked risk signature using Lasso-Cox regression is part of the analytical approach. We used TIMER, TISCH, etc., to further elaborate its relationship with the tumor immune microenvironment. Drug sensitivity analysis is conducted using GSCA. The independent prognostic gene MAFF's expression was validated utilizing GEPIA2, real-time quantitative PCR (RT-qPCR), and western blot (WB). We identify two immunosenescence-associated subtypes of PAADwith distinct gene expression profiles and clinical outcomes. The creation of a risk signature model utilizing IMSRGs reveals three genes-NCAM1, SESN1, and MAFF-that are significantly correlated with overall survival. The elevated-risk cohort, as identified by the risk assessment metric, correlates with poorer survival rates. Additionally, we uncover an association between the risk indicator and the tumor milieu, encompassing immune cell infiltration patterns and drug sensitivity profiles. Our results and published data show that MAFF levels in pancreatic cancer tissues markedly exceeds that of normal tissues and have a bad effect on prognosis. The study identifies a prognostic gene signature for PAAD, revealing its potential in personalized medicine and immunotherapy, and highlights the role of immunosenescence in cancer treatment.

免疫衰老相关基因MAFF参与胰腺腺癌的免疫调节和恶性进展。
近年来,免疫衰老已成为肿瘤学研究的焦点。然而,其在胰腺腺癌(PAAD)中的意义仍有待阐明。本研究旨在探讨免疫衰老相关基因在PAAD中的预测价值和治疗意义。我们使用TCGA和GEO的公共数据集提取临床病理因素和rna测序数据。确定差异表达基因(DEGs),然后采用一致聚类法进行分子亚型分类。使用KEGG和GO的功能富集分析、GSEA、生存分析以及使用Lasso-Cox回归设计免疫衰老相关风险特征是分析方法的一部分。我们使用TIMER、TISCH等来进一步阐述其与肿瘤免疫微环境的关系。采用GSCA进行药敏分析。利用GEPIA2、实时定量PCR (RT-qPCR)和western blot (WB)验证独立预后基因MAFF的表达。我们鉴定了两种与免疫衰老相关的paad亚型,它们具有不同的基因表达谱和临床结果。利用IMSRGs创建的风险特征模型揭示了三个基因- ncam1, SESN1和maff -与总生存率显着相关。风险评估指标确定的高风险队列与较差的生存率相关。此外,我们揭示了风险指标与肿瘤环境之间的关联,包括免疫细胞浸润模式和药物敏感性概况。我们的研究结果和已发表的数据表明,胰腺癌组织中MAFF水平明显超过正常组织,对预后有不良影响。该研究确定了PAAD的预后基因标记,揭示了其在个性化医疗和免疫治疗中的潜力,并强调了免疫衰老在癌症治疗中的作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Biological Procedures Online
Biological Procedures Online 生物-生化研究方法
CiteScore
10.50
自引率
0.00%
发文量
16
审稿时长
>12 weeks
期刊介绍: iological Procedures Online publishes articles that improve access to techniques and methods in the medical and biological sciences. We are also interested in short but important research discoveries, such as new animal disease models. Topics of interest include, but are not limited to: Reports of new research techniques and applications of existing techniques Technical analyses of research techniques and published reports Validity analyses of research methods and approaches to judging the validity of research reports Application of common research methods Reviews of existing techniques Novel/important product information Biological Procedures Online places emphasis on multidisciplinary approaches that integrate methodologies from medicine, biology, chemistry, imaging, engineering, bioinformatics, computer science, and systems analysis.
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