A Browser-Based Tool for Assessing Accuracy of Isothermal Titration Calorimetry-Derived Parameters: Kd, ΔH°, and n.

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
ChemBioChem Pub Date : 2025-07-14 DOI:10.1002/cbic.202500194
Tong Ye Wang, Amit Bijlani, Emily Hoi Pui Chao, Philip E Johnson, Sergey N Krylov
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引用次数: 0

Abstract

Accurate determination of equilibrium dissociation constants (Kd) is essential for decision-making in drug discovery and diagnostics development. Isothermal titration calorimetry (ITC), which requires no reactant labeling or immobilization, is commonly used to validate Kd values from high-throughput screens. Yet, like other methods, ITC results can be skewed by systematic errors in reactant concentrations, a fact that is often overlooked, potentially leading to misinformed decisions. To address this, accuracy confidence intervals (ACI)-ITC is developed, a browser-based tool that calculates ACI for ITC-derived parameters, offering probabilistic ranges for the true values of Kd, enthalpy change (ΔH°), and binding stoichiometry (n). Unlike traditional confidence intervals that consider only random errors, ACI-ITC explicitly accounts for systematic errors, providing a more accurate framework to assess experimental reliability. Alongside a user-friendly interface, it offers detailed guidance for determining uncertainties in concentrations and heat, which are critical inputs for assessing measurement accuracy. The tool's browser-based accessibility (https://aci.sci.yorku.ca) eliminates the need for specialized installation, enabling cross-platform compatibility and streamlining accuracy assessments. By highlighting the importance of systematic errors and providing a structured approach for their evaluation, ACI-ITC supports more robust conclusions, fosters better-informed decisions based on ITC measurements, and enhances the reliability of research findings.

一个基于浏览器的工具,用于评估等温滴定量热衍生参数的准确性:Kd, ΔH°和n。
准确测定平衡解离常数(Kd)对药物发现和诊断开发决策至关重要。等温滴定量热法(ITC)不需要标记或固定反应物,通常用于验证高通量筛选的Kd值。然而,像其他方法一样,ITC的结果可能会受到反应物浓度的系统误差的影响,这一事实往往被忽视,可能导致错误的决策。为了解决这个问题,开发了准确度置信区间(ACI)-ITC,这是一个基于浏览器的工具,用于计算itc衍生参数的ACI,提供Kd,焓变(ΔH°)和结合化学计量(n)的真实值的概率范围。与只考虑随机误差的传统置信区间不同,ACI-ITC明确地考虑了系统误差,为评估实验可靠性提供了更准确的框架。除了用户友好的界面外,它还提供了确定浓度和热量不确定度的详细指导,这是评估测量精度的关键输入。该工具基于浏览器的可访问性(https://aci.sci.yorku.ca)消除了专门安装的需要,实现了跨平台兼容性并简化了准确性评估。通过强调系统误差的重要性并为其评估提供结构化的方法,ACI-ITC支持更有力的结论,促进基于ITC测量的更明智的决策,并提高研究结果的可靠性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
ChemBioChem
ChemBioChem 生物-生化与分子生物学
CiteScore
6.10
自引率
3.10%
发文量
407
审稿时长
1 months
期刊介绍: ChemBioChem (Impact Factor 2018: 2.641) publishes important breakthroughs across all areas at the interface of chemistry and biology, including the fields of chemical biology, bioorganic chemistry, bioinorganic chemistry, synthetic biology, biocatalysis, bionanotechnology, and biomaterials. It is published on behalf of Chemistry Europe, an association of 16 European chemical societies, and supported by the Asian Chemical Editorial Society (ACES).
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