Wenpeng Deng, Jianye Chang, Alun Li, He Xie, Jue Ruan
{"title":"Efficient data filtering with multiple group conditions: a command tool for bioinformatics data analysis.","authors":"Wenpeng Deng, Jianye Chang, Alun Li, He Xie, Jue Ruan","doi":"10.1007/s42994-025-00207-6","DOIUrl":null,"url":null,"abstract":"<p><p>Bioinformatics analysis often requires the filtering of multi-datasets, based on frequency or frequency of occurrence, for decisions on retention or deletion. Existing tools for this purpose often present a challenge with complex installation, which necessitate custom coding, thereby impeding efficient data processing activities. To address this issue, Filterx, a user-friendly command line tool that written in C language, was developed that supports multi-condition filtering, based on frequency or occurrence. This tool enables users to complete the data processing tasks through a simple command line, greatly reducing both workload and data processing time. In addition, future development of this tool could facilitate its integration into various bioinformatics data analysis pipelines.</p>","PeriodicalId":53135,"journal":{"name":"aBIOTECH","volume":"6 2","pages":"274-277"},"PeriodicalIF":4.6000,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12237833/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"aBIOTECH","FirstCategoryId":"1091","ListUrlMain":"https://doi.org/10.1007/s42994-025-00207-6","RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/6/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Bioinformatics analysis often requires the filtering of multi-datasets, based on frequency or frequency of occurrence, for decisions on retention or deletion. Existing tools for this purpose often present a challenge with complex installation, which necessitate custom coding, thereby impeding efficient data processing activities. To address this issue, Filterx, a user-friendly command line tool that written in C language, was developed that supports multi-condition filtering, based on frequency or occurrence. This tool enables users to complete the data processing tasks through a simple command line, greatly reducing both workload and data processing time. In addition, future development of this tool could facilitate its integration into various bioinformatics data analysis pipelines.