Prediction of Cerebrospinal Fluid (CSF) Pressure with Generative Adversarial Network Synthetic Plasma-CSF Biomarker Pairing.

IF 2.7 4区 医学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Phani Paladugu, Rahul Kumar, Jahnavi Yelamanchi, Ethan Waisberg, Joshua Ong, Mouayad Masalkhi, Chirag Gowda, Ryung Lee, Dylan Amiri, Ram Jagadeesan, Nasif Zaman, Alireza Tavakkoli, Andrew G Lee
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引用次数: 0

Abstract

Non-invasive intracranial pressure (ICP) monitoring can help clinicians safely and efficiently monitor spaceflight-associated neuro-ocular syndrome (SANS), idiopathic intracranial hypertension, and traumatic brain injury in astronauts. Current invasive ICP measurement techniques are unsuitable for austere environments like spaceflight. In this study, we explore the potential of plasma-derived cell-free RNA (cfRNA) biomarkers as non-invasive alternatives to cerebrospinal fluid (CSF) markers for ICP assessment. We conducted a secondary analysis of NASA's Open Science Data Repository datasets 363-364, focusing on plasma and CSF biomarkers related to ICP and neurovascular health. An ensemble model combining Support Vector Machine, Gradient Boosting Regressor, and Ridge Regression was developed to capture plasma-CSF biomarker relationships. To address limited sample size, we employed a Generative Adversarial Network (GAN) to generate synthetic plasma-CSF biomarker pairs, expanding the dataset from 29 to 279 samples. The model's performance was evaluated using Mean Squared Error (MSE) and validated against real biomarker data. The GAN-augmented ensemble model achieved high predictive accuracy with an MSE of 0.0044. Synthetic plasma-CSF pairs closely aligned with actual biomarker distributions, demonstrating their effectiveness in reducing overfitting and enhancing model robustness. Strong correlations between plasma-derived RNA biomarkers and corresponding CSF indicators support their potential as non-invasive proxies for ICP assessment. This study establishes a novel framework for non-invasive ICP monitoring using plasma cfRNA profiles enriched with GAN-generated synthetic data. The approach shows promise for both spaceflight and clinical applications, potentially broadening diagnostic capabilities for ICP-related conditions. However, further validation across diverse populations is necessary, along with careful consideration of bioethical and data security issues associated with synthetic data use in clinical diagnostics.

生成对抗网络合成血浆-脑脊液生物标志物配对预测脑脊液压力
无创颅内压(ICP)监测可以帮助临床医生安全有效地监测宇航员的航天相关神经-眼综合征(SANS)、特发性颅内高压和外伤性脑损伤。目前的侵入性ICP测量技术不适合航天等恶劣环境。在这项研究中,我们探讨了血浆来源的无细胞RNA (cfRNA)生物标志物作为颅内压评估中脑脊液(CSF)标志物的非侵入性替代品的潜力。我们对NASA的开放科学数据库数据集363-364进行了二次分析,重点关注与ICP和神经血管健康相关的血浆和脑脊液生物标志物。一个集成模型结合了支持向量机,梯度增强回归和岭回归来捕获血浆-脑脊液生物标志物的关系。为了解决样本量有限的问题,我们采用生成对抗网络(GAN)生成合成血浆-脑脊液生物标志物对,将数据集从29个样本扩展到279个样本。模型的性能使用均方误差(MSE)进行评估,并根据真实的生物标志物数据进行验证。gan增强集成模型预测精度较高,MSE为0.0044。合成血浆-脑脊液对与实际生物标志物分布密切相关,证明了它们在减少过拟合和增强模型稳健性方面的有效性。血浆来源的RNA生物标志物和相应的CSF指标之间的强相关性支持了它们作为ICP评估的非侵入性替代指标的潜力。本研究建立了一种新的无创ICP监测框架,使用富含gan生成的合成数据的血浆cfRNA谱。该方法在航天和临床应用方面都有前景,有可能扩大对icp相关疾病的诊断能力。然而,在不同人群中进行进一步的验证是必要的,同时还要仔细考虑与临床诊断中合成数据使用相关的生物伦理和数据安全问题。
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来源期刊
Neuroinformatics
Neuroinformatics 医学-计算机:跨学科应用
CiteScore
6.00
自引率
6.70%
发文量
54
审稿时长
3 months
期刊介绍: Neuroinformatics publishes original articles and reviews with an emphasis on data structure and software tools related to analysis, modeling, integration, and sharing in all areas of neuroscience research. The editors particularly invite contributions on: (1) Theory and methodology, including discussions on ontologies, modeling approaches, database design, and meta-analyses; (2) Descriptions of developed databases and software tools, and of the methods for their distribution; (3) Relevant experimental results, such as reports accompanie by the release of massive data sets; (4) Computational simulations of models integrating and organizing complex data; and (5) Neuroengineering approaches, including hardware, robotics, and information theory studies.
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