Parameter Optimization for a Neurotransmission Recovery Model.

IF 2 4区 数学 Q2 BIOLOGY
Ariane Ernst, Anastasia Bankowski, Meida Jusyte, Toluwani Okunola, Tino Petrov, Alexander M Walter, Stefanie Winkelmann
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引用次数: 0

Abstract

We assess the empirical applicability of a simplified model for neurotransmitter release that incorporates maturation, fusion, and recovery of both release sites and vesicles. Model parameters are optimized by fitting the model to experimental data obtained from neuromuscular junction synapses of 3rd-instar Drosophila melanogaster larvae. In particular, the mean-squared error between the local extrema of the simulated total junction current and its experimental counterpart is minimized. We compare three estimation approaches, differing in the choice of optimized parameters and the fusion rate function. Despite the model's minimalistic structure, it demonstrates a compelling ability to replicate experimental data, yielding plausible parameter estimates for five different animals. An additional identifiability analysis based on the profile likelihood reveals practical non-identifiabilities for several parameters, highlighting the need for additional constraints or data to improve estimation accuracy.

神经传递恢复模型的参数优化。
我们评估了神经递质释放的简化模型的经验适用性,该模型包括释放位点和囊泡的成熟、融合和恢复。通过拟合3龄黑腹果蝇幼虫神经肌肉连接突触的实验数据,对模型参数进行优化。特别是,模拟总结电流的局部极值与其实验对应值之间的均方误差被最小化。我们比较了三种估计方法,在优化参数和融合率函数的选择上有所不同。尽管该模型结构简约,但它展示了复制实验数据的令人信服的能力,为五种不同的动物提供了合理的参数估计。基于剖面似然的额外可识别性分析揭示了几个参数的实际不可识别性,强调了需要额外的约束或数据来提高估计精度。
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来源期刊
CiteScore
3.90
自引率
8.60%
发文量
123
审稿时长
7.5 months
期刊介绍: The Bulletin of Mathematical Biology, the official journal of the Society for Mathematical Biology, disseminates original research findings and other information relevant to the interface of biology and the mathematical sciences. Contributions should have relevance to both fields. In order to accommodate the broad scope of new developments, the journal accepts a variety of contributions, including: Original research articles focused on new biological insights gained with the help of tools from the mathematical sciences or new mathematical tools and methods with demonstrated applicability to biological investigations Research in mathematical biology education Reviews Commentaries Perspectives, and contributions that discuss issues important to the profession All contributions are peer-reviewed.
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