Bifunctional Phyto-Synthesized Nano Silver for Mitigating Salinity-Induced Dormancy and Associated Fungal Infections During Seed Germination in Brassica juncea with Integration of Machine Learning-Based Predictive Modeling.
Krish Thakkar, Vaibhav Singh, Prashant Sharma, Prince Jain, Anupam Jyoti, Ashwani Kumar, Saurabhkumar Mehta, Abhijeet Singh, Manish Singh, Juhi Saxena
{"title":"Bifunctional Phyto-Synthesized Nano Silver for Mitigating Salinity-Induced Dormancy and Associated Fungal Infections During Seed Germination in Brassica juncea with Integration of Machine Learning-Based Predictive Modeling.","authors":"Krish Thakkar, Vaibhav Singh, Prashant Sharma, Prince Jain, Anupam Jyoti, Ashwani Kumar, Saurabhkumar Mehta, Abhijeet Singh, Manish Singh, Juhi Saxena","doi":"10.1007/s12010-025-05301-5","DOIUrl":null,"url":null,"abstract":"<p><p>Salinity-induced dormancy associated with fungal infection during germination in plants is the major contributor to abiotic and biotic stress, leading to a loss in crop productivity. The present study has been designed to evaluate the dual functions of Cymbopogon citratus-derived silver nanoparticles (CC-AgNPs) for enhancing the germination and prevention of Aspergillus niger (ATCC 6275) infection in seeds of Brassica juncea. AgNPs were synthesized using the cell-free aqueous extract of C. citratus followed by their characterization using LC-MS at variable voltage for trace level detection of compounds responsible for bio-reduction. The extract contained metabolites belonging to alkaloids, flavonoids, amino acid, and saponins. UV-Vis spectra revealed AgNP synthesis with a peak at 430 nm and stability for up to 180 days. Additionally, FTIR peaks demonstrated the presence of capped bioactive as reducing and stabilizing agents. TEM analysis depicted an AgNP size of 33 nm and spherical. Salt-stressed B. juncea seeds were primed with 100 ppm of CC-AgNPs, which significantly increased the germination rates and total seedling growth. This has been mainly favored by the restoration of proteins involved in germination, the antioxidant potential of green nano-silver, along with ameliorating amylase activity (15.53 ± 0.3 mg g<sup>-1</sup> fresh weight min<sup>-1</sup>) for increasing soluble sugars (15.37 ± 0.3 mg g<sup>-1</sup> fresh weight) to support the germination process. Furthermore, CC-AgNPs showed antifungal activity against A. niger as demonstrated by radial growth inhibition assay. Machine learning models, including Extra Trees, CatBoost, XGBoost, and Ensemble Averaging, have also been employed to predict seedling growth performance under AgNP treatment, enhancing the predictive and analytical strength of the study. Molecular docking results revealed that Ag in CC-AgNPs collectively mediate the antifungal activity by interacting with specific domains of fungal protein chitin deacetylase. Also, these CC-AgNPs are safe to use, as examined by biocompatibility assays on soil microbiota, human RBCs, and human skin fibroblast cell lines. The results herein prospect the employment of phyto-synthesized AgNPs for nanospray applications in the field, mitigating not only the salt-induced seed dormancy but also battling fungal infections during seed germination.</p>","PeriodicalId":465,"journal":{"name":"Applied Biochemistry and Biotechnology","volume":" ","pages":""},"PeriodicalIF":3.3000,"publicationDate":"2025-07-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Applied Biochemistry and Biotechnology","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1007/s12010-025-05301-5","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Salinity-induced dormancy associated with fungal infection during germination in plants is the major contributor to abiotic and biotic stress, leading to a loss in crop productivity. The present study has been designed to evaluate the dual functions of Cymbopogon citratus-derived silver nanoparticles (CC-AgNPs) for enhancing the germination and prevention of Aspergillus niger (ATCC 6275) infection in seeds of Brassica juncea. AgNPs were synthesized using the cell-free aqueous extract of C. citratus followed by their characterization using LC-MS at variable voltage for trace level detection of compounds responsible for bio-reduction. The extract contained metabolites belonging to alkaloids, flavonoids, amino acid, and saponins. UV-Vis spectra revealed AgNP synthesis with a peak at 430 nm and stability for up to 180 days. Additionally, FTIR peaks demonstrated the presence of capped bioactive as reducing and stabilizing agents. TEM analysis depicted an AgNP size of 33 nm and spherical. Salt-stressed B. juncea seeds were primed with 100 ppm of CC-AgNPs, which significantly increased the germination rates and total seedling growth. This has been mainly favored by the restoration of proteins involved in germination, the antioxidant potential of green nano-silver, along with ameliorating amylase activity (15.53 ± 0.3 mg g-1 fresh weight min-1) for increasing soluble sugars (15.37 ± 0.3 mg g-1 fresh weight) to support the germination process. Furthermore, CC-AgNPs showed antifungal activity against A. niger as demonstrated by radial growth inhibition assay. Machine learning models, including Extra Trees, CatBoost, XGBoost, and Ensemble Averaging, have also been employed to predict seedling growth performance under AgNP treatment, enhancing the predictive and analytical strength of the study. Molecular docking results revealed that Ag in CC-AgNPs collectively mediate the antifungal activity by interacting with specific domains of fungal protein chitin deacetylase. Also, these CC-AgNPs are safe to use, as examined by biocompatibility assays on soil microbiota, human RBCs, and human skin fibroblast cell lines. The results herein prospect the employment of phyto-synthesized AgNPs for nanospray applications in the field, mitigating not only the salt-induced seed dormancy but also battling fungal infections during seed germination.
期刊介绍:
This journal is devoted to publishing the highest quality innovative papers in the fields of biochemistry and biotechnology. The typical focus of the journal is to report applications of novel scientific and technological breakthroughs, as well as technological subjects that are still in the proof-of-concept stage. Applied Biochemistry and Biotechnology provides a forum for case studies and practical concepts of biotechnology, utilization, including controls, statistical data analysis, problem descriptions unique to a particular application, and bioprocess economic analyses. The journal publishes reviews deemed of interest to readers, as well as book reviews, meeting and symposia notices, and news items relating to biotechnology in both the industrial and academic communities.
In addition, Applied Biochemistry and Biotechnology often publishes lists of patents and publications of special interest to readers.