Developing Lotka–Volterra Based Models to Describe Bdellovibrio Predation in a Batch and Chemostat Experimental System

IF 2.7 4区 生物学 Q2 ENVIRONMENTAL SCIENCES
Ayo Ogundero, Stephanie Connelly, William T. Sloan
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Abstract

The application of Bdellovibrio predatory bacteria as an antibiotic alternative is hindered by the lack of experimentally validated models. To address this, we use flow cytometry as a high-throughput method to accurately quantify Bdellovibrio bacterivorous and Pseudomonas sp. prey growth in batch culture, enabling the determination of key growth parameters. We then develop Lotka–Volterra based predator–prey mathematical models with Holling type II and Holling type III dynamics, incorporating glucose as the prey substrate. We conduct experiments in batch and chemostat cultures to evaluate the ability of the model to predict B. bacterivorous predation. In batch systems, B. bacteriovorus dynamics can be captured by the Holling type III numerical response (distance correlation = 0.999), which supports the hypothesis of premature prey lysis at high predator–prey ratios. Using chemostat simulations, we identify parameter regimes leading to predator washout, stable coexistence, or predator–prey oscillations. We evaluate this by inducing an experimental realisation of sustained predator–prey oscillations in a chemostat. This is a key phenomenon necessary for self-sustaining biocontrol. Our findings provide a quantitative foundation for optimising B. bacteriovorus applications as a biocontrol agent across diverse fields, including clinical therapy, agriculture, and water treatment.

Abstract Image

基于Lotka-Volterra的批量化实验系统中蛭形弧菌捕食模型的建立
Bdellovibrio掠食性细菌作为抗生素替代品的应用受到缺乏实验验证模型的阻碍。为了解决这个问题,我们使用流式细胞术作为一种高通量的方法来准确地量化Bdellovibrio bacteriorio和Pseudomonas sp. prey在批量培养中的生长,从而确定关键的生长参数。然后,我们建立了基于Lotka-Volterra的捕食者-猎物数学模型,其中包含Holling II型和Holling III型动力学,并将葡萄糖作为猎物底物。我们在批量和恒化培养中进行了实验,以评估该模型预测嗜菌双歧杆菌捕食的能力。在批处理系统中,卵形芽孢杆菌的动态可以被Holling III型数值响应(距离相关= 0.999)捕获,这支持了在高捕食者-猎物比下猎物过早裂解的假设。利用恒化模拟,我们确定了导致捕食者淘汰、稳定共存或捕食者-猎物振荡的参数制度。我们通过诱导实验实现持续的捕食者-猎物振荡来评估这一点。这是自我维持生物防治所必需的关键现象。我们的研究结果为优化芽孢杆菌作为生物防治剂在不同领域的应用提供了定量基础,包括临床治疗、农业和水处理。
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来源期刊
Environmental Microbiology Reports
Environmental Microbiology Reports ENVIRONMENTAL SCIENCES-MICROBIOLOGY
CiteScore
6.00
自引率
3.00%
发文量
91
审稿时长
3.0 months
期刊介绍: The journal is identical in scope to Environmental Microbiology, shares the same editorial team and submission site, and will apply the same high level acceptance criteria. The two journals will be mutually supportive and evolve side-by-side. Environmental Microbiology Reports provides a high profile vehicle for publication of the most innovative, original and rigorous research in the field. The scope of the Journal encompasses the diversity of current research on microbial processes in the environment, microbial communities, interactions and evolution and includes, but is not limited to, the following: the structure, activities and communal behaviour of microbial communities microbial community genetics and evolutionary processes microbial symbioses, microbial interactions and interactions with plants, animals and abiotic factors microbes in the tree of life, microbial diversification and evolution population biology and clonal structure microbial metabolic and structural diversity microbial physiology, growth and survival microbes and surfaces, adhesion and biofouling responses to environmental signals and stress factors modelling and theory development pollution microbiology extremophiles and life in extreme and unusual little-explored habitats element cycles and biogeochemical processes, primary and secondary production microbes in a changing world, microbially-influenced global changes evolution and diversity of archaeal and bacterial viruses new technological developments in microbial ecology and evolution, in particular for the study of activities of microbial communities, non-culturable microorganisms and emerging pathogens.
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