Arbutin in Alzheimer’s disease: A network-based approach to uncover drug targets through molecular mapping

Deenathayalan Uvarajan, Manish Ravikumar, Brindha Durairaj
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Abstract

Alzheimer’s disease (AD), a leading cause of dementia, is characterized by progressive neurodegeneration and cognitive decline. Current treatments, including cholinesterase and N-methyl-D-aspartate (NMDA) inhibitors, provide symptomatic relief but are often associated with adverse effects. This has driven interest in natural compounds like arbutin, an endogenous molecule, for their therapeutic potential in AD. This study employs a network pharmacology approach to explore arbutin’s molecular mechanisms and pathways. Arbutin targets were retrieved from SwissTargetPrediction and PharmMapper, while AD-related targets were obtained from DisGeNET and GeneCards. After merging and removing duplicates, 37 common targets were identified. Gene ontology and KEGG enrichment analyses, performed using ShinyGO, revealed key biological processes associated with AD, including phosphorus metabolic regulation, cell proliferation, apoptosis, oxidative response, and abiotic stress. Among the top five biological processes, nine out of ten hub genes were enriched. KEGG analysis highlighted ten significant pathways, with AD and cancer being the most predominant based on gene count. The Maximal Clique Centrality method in the CytoHubba plugin of Cytoscape identified the top ten hub genes. Molecular docking studies using PyRx and Discovery Studio revealed that AKT-1 exhibited the highest binding affinity with arbutin (-7.2 kcal/mol). These findings suggest that arbutin plays a crucial role in modulating key pathways associated with AD, offering potential therapeutic benefits. Targeting these pathways could reduce AD progression, highlighting arbutin as a promising candidate for further drug development.
阿尔茨海默病中的熊果苷:一种基于网络的方法,通过分子定位发现药物靶点
阿尔茨海默病(AD)是痴呆症的主要原因,其特征是进行性神经变性和认知能力下降。目前的治疗,包括胆碱酯酶和n -甲基- d -天冬氨酸(NMDA)抑制剂,提供症状缓解,但往往与不良反应相关。这引起了人们对熊果苷等天然化合物的兴趣,熊果苷是一种内源性分子,具有治疗阿尔茨海默病的潜力。本研究采用网络药理学方法探讨熊果苷的分子机制和途径。熊果苷靶点从SwissTargetPrediction和PharmMapper中检索,ad相关靶点从DisGeNET和GeneCards中检索。在合并和删除重复项后,确定了37个共同目标。使用ShinyGO进行的基因本体和KEGG富集分析揭示了AD相关的关键生物学过程,包括磷代谢调节、细胞增殖、凋亡、氧化反应和非生物应激。在前5个生物过程中,10个枢纽基因中有9个富集。KEGG分析强调了10个重要的途径,基于基因计数,AD和癌症是最主要的。在Cytoscape的CytoHubba插件中,使用最大团中心性方法鉴定出前10个中心基因。利用PyRx和Discovery Studio进行分子对接研究发现,AKT-1与熊果苷的结合亲和力最高(-7.2 kcal/mol)。这些发现表明熊果苷在调节与阿尔茨海默病相关的关键途径中起着至关重要的作用,提供了潜在的治疗益处。靶向这些途径可以减少阿尔茨海默病的进展,突出熊果苷作为进一步药物开发的有希望的候选者。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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