A Deep Learning and Explainable AI-Based Approach for the Classification of Discomycetes Species.

IF 3.6 3区 生物学 Q1 BIOLOGY
Aras Fahrettin Korkmaz, Fatih Ekinci, Şehmus Altaş, Eda Kumru, Mehmet Serdar Güzel, Ilgaz Akata
{"title":"A Deep Learning and Explainable AI-Based Approach for the Classification of Discomycetes Species.","authors":"Aras Fahrettin Korkmaz, Fatih Ekinci, Şehmus Altaş, Eda Kumru, Mehmet Serdar Güzel, Ilgaz Akata","doi":"10.3390/biology14060719","DOIUrl":null,"url":null,"abstract":"<p><p>This study presents a novel approach for classifying Discomycetes species using deep learning and explainable artificial intelligence (XAI) techniques. The EfficientNet-B0 model achieved the highest performance, reaching 97% accuracy, a 97% F1-score, and a 99% AUC, making it the most effective model. MobileNetV3-L followed closely, with 96% accuracy, a 96% F1-score, and a 99% AUC, while ShuffleNet also showed strong results, reaching 95% accuracy and a 95% F1-score. In contrast, the EfficientNet-B4 model exhibited lower performance, achieving 89% accuracy, an 89% F1-score, and a 93% AUC. These results highlight the superior feature extraction and classification capabilities of EfficientNet-B0 and MobileNetV3-L for biological data. Explainable AI (XAI) techniques, including Grad-CAM and Score-CAM, enhanced the interpretability and transparency of model decisions. These methods offered insights into the internal decision-making processes of deep learning models, ensuring reliable classification results. This approach improves traditional taxonomy by advancing data processing and supporting accurate species differentiation. In the future, using larger datasets and more advanced AI models is recommended for biodiversity monitoring, ecosystem modeling, medical imaging, and bioinformatics. Beyond high classification performance, this study offers an ecologically meaningful approach by supporting biodiversity conservation and the accurate identification of fungal species. These findings contribute to developing more precise and reliable biological classification systems, setting new standards for AI-driven research in biological sciences.</p>","PeriodicalId":48624,"journal":{"name":"Biology-Basel","volume":"14 6","pages":""},"PeriodicalIF":3.6000,"publicationDate":"2025-06-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12189597/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biology-Basel","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3390/biology14060719","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

This study presents a novel approach for classifying Discomycetes species using deep learning and explainable artificial intelligence (XAI) techniques. The EfficientNet-B0 model achieved the highest performance, reaching 97% accuracy, a 97% F1-score, and a 99% AUC, making it the most effective model. MobileNetV3-L followed closely, with 96% accuracy, a 96% F1-score, and a 99% AUC, while ShuffleNet also showed strong results, reaching 95% accuracy and a 95% F1-score. In contrast, the EfficientNet-B4 model exhibited lower performance, achieving 89% accuracy, an 89% F1-score, and a 93% AUC. These results highlight the superior feature extraction and classification capabilities of EfficientNet-B0 and MobileNetV3-L for biological data. Explainable AI (XAI) techniques, including Grad-CAM and Score-CAM, enhanced the interpretability and transparency of model decisions. These methods offered insights into the internal decision-making processes of deep learning models, ensuring reliable classification results. This approach improves traditional taxonomy by advancing data processing and supporting accurate species differentiation. In the future, using larger datasets and more advanced AI models is recommended for biodiversity monitoring, ecosystem modeling, medical imaging, and bioinformatics. Beyond high classification performance, this study offers an ecologically meaningful approach by supporting biodiversity conservation and the accurate identification of fungal species. These findings contribute to developing more precise and reliable biological classification systems, setting new standards for AI-driven research in biological sciences.

一种基于深度学习和可解释人工智能的藓类分类方法。
本研究提出了一种利用深度学习和可解释人工智能(XAI)技术对难产菌进行分类的新方法。effentnet - b0模型达到了最高的性能,达到了97%的准确率,97%的f1分数和99%的AUC,使其成为最有效的模型。MobileNetV3-L紧随其后,准确率为96%,f1得分为96%,AUC为99%,而ShuffleNet也显示出强劲的结果,准确率达到95%,f1得分为95%。相比之下,effentnet - b4模型表现出较低的性能,准确率为89%,f1得分为89%,AUC为93%。这些结果突出了EfficientNet-B0和MobileNetV3-L对生物数据的优越特征提取和分类能力。可解释AI (XAI)技术,包括Grad-CAM和Score-CAM,增强了模型决策的可解释性和透明度。这些方法提供了对深度学习模型内部决策过程的洞察,确保了可靠的分类结果。该方法通过改进数据处理和支持准确的物种分化,改进了传统分类学。在未来,建议在生物多样性监测、生态系统建模、医学成像和生物信息学方面使用更大的数据集和更先进的人工智能模型。除了高分类性能外,该研究还为生物多样性保护和真菌物种的准确鉴定提供了有生态意义的方法。这些发现有助于开发更精确和可靠的生物分类系统,为人工智能驱动的生物科学研究设定新的标准。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Biology-Basel
Biology-Basel Biological Science-Biological Science
CiteScore
5.70
自引率
4.80%
发文量
1618
审稿时长
11 weeks
期刊介绍: Biology (ISSN 2079-7737) is an international, peer-reviewed, quick-refereeing open access journal of Biological Science published by MDPI online. It publishes reviews, research papers and communications in all areas of biology and at the interface of related disciplines. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. Electronic files regarding the full details of the experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信