The 2 Sigma Genus Concept in mammalogy: Lessons from Lasiurus.

IF 2.6 3区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
PLoS ONE Pub Date : 2025-06-25 eCollection Date: 2025-01-01 DOI:10.1371/journal.pone.0325554
Amy B Baird, Janet K Braun, Mark D Engstrom, Burton K Lim, Michael A Mares, Luis A Ruedas, John C Patton, John W Bickham
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引用次数: 0

Abstract

Species concepts are well established and apply across diverse groups of organisms; however, there is no consensus on what defines higher taxonomic groups. The genus rank is important to taxonomists because it comprises part of the scientific name of an organism. A consistent and biologically meaningful method for determining generic status is needed for taxonomic stability and utility. Lasiurine bats are a group for which there is disagreement on how many genera to recognize. Some authors argue for splitting this group into three genera based on morphology, genetic divergence, and time of divergence; others argue that a single genus should be maintained. Here, we use lasiurines to explore generic-level taxonomy and how it is applied. Genetic divergence levels are compared among sister genera and within genera of vespertilionine bats using Cytochrome b (Cytb) sequences. We used Cytb because it is the most sequenced mitochondrial gene in mammals, but other genes might be more appropriate for a different taxon. Future methods will eventually use complete mitogenomes and genomes. We conclude that lasiurine bats are most appropriately divided into three genera to maintain taxonomic consistency within their subfamily. Since Linnaeus, the quarter millennium of progress in the science of mammalogy has provided a binomial nomenclatural basis from which can be extracted an acceptable range of genetic diversity upon which to establish generic level taxonomy. We offer a biologically meaningful operational definition of the genus, which we call the 2 Sigma Genus Concept, based on genetic divergence between a genus and its sister genus or lineage and compared to the divergence between sister pairs of established genera in the same higher taxonomic category. Our method is phylogenetic; sister genera are based on the best phylogeny for the higher taxonomic category. Genera must be monophyletic and differ from their closest relatives by not more than two standard deviations above or below the mean value of genetic distance for the larger taxonomic group in which they are contained. There should be genetic-based characters (e.g., morphology, protein structure, behavior) that are diagnostic for each genus. Our method is novel in that it uses the statistical distribution of sister divergences within a higher category to guide the allocation of generic status to monophyletic lineages. Within Vespertilioninae, the mean genetic distance between sister genera is 20.68% ± 3.89% (K2P) for the Cytb gene. Therefore, a proposed new genus should have >12.90% genetic distance to its sister genus. Genera that are > 2 standard deviations above the mean (>28.46%) are candidates to be recognized as a higher category such as tribe or subfamily. The sister-genus divergence for the monophyletic lineage that includes all lasiurine bats is 31.14% ± 1.64% which qualifies it as a higher category (i.e., tribe), and the sister-genus divergences of the three monophyletic lineages within Lasiurini (i.e., red, yellow and hoary bats) are 21.77% and 22.91% which qualifies them for genera. We show the applicability of the method beyond Vespertilioninae by providing a case study where we apply it in a distantly related subfamily of bats.

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哺乳动物中的2西格玛属概念:来自拉西乌斯的教训。
物种概念已经确立,并适用于不同的生物群体;然而,对于如何定义高等分类类群还没有达成共识。属级对分类学家来说很重要,因为它包含了一个生物学名的一部分。为了分类的稳定性和实用性,需要一种一致的和有生物学意义的方法来确定属的地位。Lasiurine蝙蝠是一个在识别多少属上存在分歧的群体。一些作者主张根据形态、遗传分化和分化时间将这一类群分为三个属;另一些人则认为应该保持单一的属。在这里,我们使用lasiurines来探索通用级分类法及其应用方式。利用细胞色素b (Cytb)序列比较了姐妹属之间和属内的遗传差异水平。我们使用Cytb是因为它是哺乳动物中测序最多的线粒体基因,但其他基因可能更适合于不同的分类单元。未来的方法最终将使用完整的有丝分裂基因组和基因组。我们的结论是,为了保持其亚科的分类一致性,将拉西尿蝙蝠划分为三个属是最合适的。自林奈以来,哺乳动物科学的四分之一千年的进步提供了一个二项命名基础,从中可以提取出一个可接受的遗传多样性范围,并在此基础上建立属级分类学。我们提供了一个生物学上有意义的属的操作定义,我们称之为2西格玛属概念,基于一个属和它的姐妹属或谱系之间的遗传差异,并与同一高等分类类别中已建立的属的姐妹对之间的差异进行比较。我们的方法是系统发育的;姐妹属是基于较高分类范畴的最佳系统发育。属必须是单系的,并且与其最近的亲属的差异不超过两个标准偏差,高于或低于包含它们的较大分类群的遗传距离平均值。应该有基于遗传的特征(例如,形态,蛋白质结构,行为)来诊断每个属。我们的方法是新颖的,因为它使用更高类别内姐妹差异的统计分布来指导对单系谱系的一般地位的分配。在vespertiloninae中,Cytb基因姊妹属间的平均遗传距离为20.68%±3.89% (K2P)。因此,新属与其姊妹属的遗传距离应在12.90%左右。高于平均值(>28.46%)2个标准差的属可以被认为是一个更高的类别,如部落或亚族。包括所有Lasiurini蝙蝠在内的单系系姊妹属差异为31.14%±1.64%,可作为一个更高的类别(即部落),而Lasiurini内3个单系系(即红、黄、白蝙蝠)的姊妹属差异分别为21.77%和22.91%,可作为属。我们通过提供一个案例研究来证明该方法在蝙蝠远亲亚家族中的适用性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
PLoS ONE
PLoS ONE 生物-生物学
CiteScore
6.20
自引率
5.40%
发文量
14242
审稿时长
3.7 months
期刊介绍: PLOS ONE is an international, peer-reviewed, open-access, online publication. PLOS ONE welcomes reports on primary research from any scientific discipline. It provides: * Open-access—freely accessible online, authors retain copyright * Fast publication times * Peer review by expert, practicing researchers * Post-publication tools to indicate quality and impact * Community-based dialogue on articles * Worldwide media coverage
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