Active Contours Connected Component Analysis Segmentation Method of Cancerous Lesions in Unsupervised Breast Histology Images.

IF 3.8 3区 医学 Q2 ENGINEERING, BIOMEDICAL
Vincent Majanga, Ernest Mnkandla, Zenghui Wang, Donatien Koulla Moulla
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引用次数: 0

Abstract

Automatic segmentation of nuclei on breast cancer histology images is a basic and important step for diagnosis in a computer-aided diagnostic approach and helps pathologists discover cancer early. Nuclei segmentation remains a challenging problem due to cancer biology and the variability of tissue characteristics; thus, their detection in an image is a very tedious and time-consuming task. In this context, overlapping nuclei objects present difficulties in separating them by conventional segmentation methods; thus, active contours can be employed in image segmentation. A major limitation of the active contours method is its inability to resolve image boundaries/edges of intersecting objects and segment multiple overlapping objects as a single object. Therefore, we present a hybrid active contour (connected component + active contours) method to segment cancerous lesions in unsupervised human breast histology images. Initially, this approach prepares and pre-processes data through various augmentation methods to increase the dataset size. Then, a stain normalization technique is applied to these augmented images to isolate nuclei features from tissue structures. Secondly, morphology operation techniques, namely erosion, dilation, opening, and distance transform, are used to highlight foreground and background pixels while removing overlapping regions from the highlighted nuclei objects on the image. Consequently, the connected components method groups these highlighted pixel components with similar intensity values and assigns them to their relevant labeled component to form a binary mask. Once all binary-masked groups have been determined, a deep-learning recurrent neural network (RNN) model from the Keras architecture uses this information to automatically segment nuclei objects having cancerous lesions on the image via the active contours method. This approach, therefore, uses the capabilities of connected components analysis to solve the limitations of the active contour method. This segmentation method is evaluated on an unsupervised, augmented human breast cancer histology dataset of 15,179 images. This proposed method produced a significant evaluation result of 98.71% accuracy score.

无监督乳腺组织图像中癌变病灶的活动轮廓连通分量分析分割方法。
在计算机辅助诊断方法中,对乳腺癌组织图像进行核的自动分割是诊断的基础和重要步骤,有助于病理学家早期发现癌症。由于癌症生物学和组织特征的可变性,细胞核分割仍然是一个具有挑战性的问题;因此,在图像中检测它们是一项非常繁琐和耗时的任务。在这种情况下,重叠核对象在用常规分割方法分离它们时存在困难;因此,活动轮廓可以用于图像分割。活动轮廓法的一个主要限制是无法解析相交物体的图像边界/边缘,也无法将多个重叠物体分割为单个物体。因此,我们提出了一种混合活动轮廓(连接分量+活动轮廓)方法来分割无监督的人类乳腺组织学图像中的癌病变。最初,该方法通过各种增强方法准备和预处理数据,以增加数据集的大小。然后,将染色归一化技术应用于这些增强图像,从组织结构中分离出细胞核特征。其次,利用侵蚀、扩张、开放和距离变换等形态学运算技术对前景和背景像素进行高亮处理,同时对高亮处理的核对象去除重叠区域;因此,连通组件方法将这些具有相似强度值的高亮像素组件分组,并将其分配给相应的标记组件,形成二值掩码。一旦确定了所有的二值掩模组,来自Keras架构的深度学习递归神经网络(RNN)模型就会使用这些信息,通过活动轮廓法自动分割图像上有癌变病灶的核对象。因此,该方法利用连通构件分析的能力来解决活动轮廓法的局限性。这种分割方法在一个无监督的、增强的人类乳腺癌组织学数据集的15179张图像上进行了评估。该方法获得了98.71%的准确率评价结果。
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来源期刊
Bioengineering
Bioengineering Chemical Engineering-Bioengineering
CiteScore
4.00
自引率
8.70%
发文量
661
期刊介绍: Aims Bioengineering (ISSN 2306-5354) provides an advanced forum for the science and technology of bioengineering. It publishes original research papers, comprehensive reviews, communications and case reports. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. All aspects of bioengineering are welcomed from theoretical concepts to education and applications. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. There are, in addition, four key features of this Journal: ● We are introducing a new concept in scientific and technical publications “The Translational Case Report in Bioengineering”. It is a descriptive explanatory analysis of a transformative or translational event. Understanding that the goal of bioengineering scholarship is to advance towards a transformative or clinical solution to an identified transformative/clinical need, the translational case report is used to explore causation in order to find underlying principles that may guide other similar transformative/translational undertakings. ● Manuscripts regarding research proposals and research ideas will be particularly welcomed. ● Electronic files and software regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material. ● We also accept manuscripts communicating to a broader audience with regard to research projects financed with public funds. Scope ● Bionics and biological cybernetics: implantology; bio–abio interfaces ● Bioelectronics: wearable electronics; implantable electronics; “more than Moore” electronics; bioelectronics devices ● Bioprocess and biosystems engineering and applications: bioprocess design; biocatalysis; bioseparation and bioreactors; bioinformatics; bioenergy; etc. ● Biomolecular, cellular and tissue engineering and applications: tissue engineering; chromosome engineering; embryo engineering; cellular, molecular and synthetic biology; metabolic engineering; bio-nanotechnology; micro/nano technologies; genetic engineering; transgenic technology ● Biomedical engineering and applications: biomechatronics; biomedical electronics; biomechanics; biomaterials; biomimetics; biomedical diagnostics; biomedical therapy; biomedical devices; sensors and circuits; biomedical imaging and medical information systems; implants and regenerative medicine; neurotechnology; clinical engineering; rehabilitation engineering ● Biochemical engineering and applications: metabolic pathway engineering; modeling and simulation ● Translational bioengineering
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