Monte Carlo Simulation of Pesticide Toxicity for Rainbow Trout (Oncorhynchus mykiss) Using New Criteria of Predictive Potential.

IF 4.4 Q1 TOXICOLOGY
Alla P Toropova, Andrey A Toropov, Emilio Benfenati
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引用次数: 0

Abstract

Background: The toxicity of pesticides for fish in general and Rainbow Trout (Oncorhynchus mykiss) in particular is an important ecological indicator required by regulations, and it implies the use of a large number of fish. The number of animals needed would be even higher to evaluate metabolites and pesticide impurities. Considering ethical issues, the costs, and the necessary resources, the use of in silico models is often proposed. Aim of the study: We explore the use of advanced Monte Carlo methods to obtain improved results for models testing Rainbow Trout (Oncorhynchus mykiss) acute toxicity. Several versions of the stochastic Monte Carlo simulation of pesticide toxicity for Rainbow Trout, carried out using CORAL software, were studied. The set of substances was split into four subsets: active training, passive training, calibration, and validation. Modeling was repeated five times to enable better statistical evaluation. To improve the predictive potential of models, the index of ideality of correlation (IIC), correlation intensity index (CII), and coefficient of conformism of correlation prediction (CCCP) were applied. Main results and novelty: The most suitable results were observed in the case of the CCCP-based optimization for SMILES-based descriptors, achieving an R2 of 0.88 on the validation set, in all five random splits, demonstrating consistent and robust modeling performance. The relationship of information systems related to QSAR simulation and new ideas is discussed, assigning a key role to fundamental concepts like mass and energy. The study of the mentioned criteria of predictive potential during the conducted computer experiments showed that even though they are all aimed at improving the predictive potential, their values do not correlate, except for the CII and the CCCP. This means that, in general, the information impact of the considered criteria has a different nature, at least in the case of the simulation of toxicity for Rainbow Trout (Oncorhynchus mykiss). The applicability domain of the model is specific for pesticides; the software identifies potential outliers by looking at rare molecular fragments.

Abstract Image

Abstract Image

基于预测电位新准则的虹鳟鱼农药毒性蒙特卡罗模拟
背景:农药对鱼类的毒性,特别是对虹鳟鱼的毒性是法规要求的一项重要的生态指标,它意味着大量的鱼类使用。评估代谢物和农药杂质所需的动物数量甚至更高。考虑到伦理问题、成本和必要的资源,通常建议使用计算机模型。研究目的:利用先进的蒙特卡罗方法,对虹鳟鱼急性毒性的模型测试结果进行了改进。利用CORAL软件对几种不同版本的虹鳟农药毒性随机蒙特卡罗模拟进行了研究。这些物质被分成四个子集:主动训练、被动训练、校准和验证。建模重复五次,以便更好地进行统计评估。为了提高模型的预测潜力,采用了相关理想指数(IIC)、相关强度指数(CII)和相关预测符合性系数(CCCP)。主要结果和新颖性:在对基于smiles的描述符进行基于cccp的优化的情况下观察到最合适的结果,在所有五个随机分割的验证集中实现R2为0.88,显示出一致和稳健的建模性能。讨论了与QSAR仿真相关的信息系统与新思想的关系,指出了质量和能量等基本概念的关键作用。在计算机实验中对上述预测电位标准的研究表明,尽管它们都旨在提高预测电位,但除了CII和CCCP外,它们的值并不相关。这意味着,一般来说,所考虑的标准的信息影响具有不同的性质,至少在虹鳟(Oncorhynchus mykiss)毒性模拟的情况下是这样。该模型的适用范围是针对农药的;该软件通过观察罕见的分子片段来识别潜在的异常值。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
5.30
自引率
1.70%
发文量
21
审稿时长
10 weeks
期刊介绍: The Journal of Xenobiotics publishes original studies concerning the beneficial (pharmacology) and detrimental effects (toxicology) of xenobiotics in all organisms. A xenobiotic (“stranger to life”) is defined as a chemical that is not usually found at significant concentrations or expected to reside for long periods in organisms. In addition to man-made chemicals, natural products could also be of interest if they have potent biological properties, special medicinal properties or that a given organism is at risk of exposure in the environment. Topics dealing with abiotic- and biotic-based transformations in various media (xenobiochemistry) and environmental toxicology are also of interest. Areas of interests include the identification of key physical and chemical properties of molecules that predict biological effects and persistence in the environment; the molecular mode of action of xenobiotics; biochemical and physiological interactions leading to change in organism health; pathophysiological interactions of natural and synthetic chemicals; development of biochemical indicators including new “-omics” approaches to identify biomarkers of exposure or effects for xenobiotics.
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