AI-Guided Chemotherapy Optimization in Lung Cancer Using Genomic and Survival Data.

IF 3 3区 医学 Q2 HEALTH CARE SCIENCES & SERVICES
Hojin Moon, Phan N Nguyen, Jaehee Park, Minho Lee, Sohyul Ahn
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引用次数: 0

Abstract

Background: Adjuvant chemotherapy (ACT) can improve survival outcomes for patients with early-stage non-small cell lung cancer (NSCLC), but its benefit varies significantly across individuals. Identifying patients who are likely to benefit from ACT remains a critical challenge in precision oncology. Methods: We constructed a meta-database from two publicly available NSCLC gene expression datasets (GSE37745 and GSE29013) to address population heterogeneity. Feature selection was performed using Cox-based univariate screening with leave-one-out cross-validation. We then developed and compared three survival modeling frameworks: bagging with elastic net penalized Cox regression, Random Survival Forests (RSF), and DeepSurv neural survival networks. All models incorporated clinical covariates and selected genomic features to predict survival and recommend ACT versus observation (OBS). Results: Across 155 patients, RSF achieved the highest predictive performance, with a test concordance index (C-index) of0.885. Model-based recommendations were associated with improved survival in both training and test datasets, as confirmed by Kaplan-Meier analysis. Key genomic features identified included TTR, MTURN, and ETV3, suggesting their potential relevance in treatment response stratification. DeepSurv demonstrated strong predictive accuracy (C-index = 0.982) but less distinct survival curve separation compared to RSF. Conclusions: Our findings demonstrate that machine learning-driven survival models, particularly RSF, can effectively identify NSCLC patients who may benefit from ACT. This approach supports data-driven, individualized chemotherapy decision-making and contributes to advancing personalized treatment strategies in early-stage NSCLC.

基于基因组和生存数据的ai指导肺癌化疗优化
背景:辅助化疗(ACT)可以改善早期非小细胞肺癌(NSCLC)患者的生存结果,但其获益在个体之间存在显著差异。确定可能受益于ACT的患者仍然是精确肿瘤学的关键挑战。方法:我们从两个公开的NSCLC基因表达数据集(GSE37745和GSE29013)构建了一个元数据库,以解决群体异质性。特征选择采用基于cox的单变量筛选和留一交叉验证。然后,我们开发并比较了三种生存建模框架:弹性网惩罚Cox回归的套袋,随机生存森林(RSF)和DeepSurv神经生存网络。所有模型均纳入临床协变量和选定的基因组特征来预测生存,并推荐ACT与观察(OBS)对比。结果:在155例患者中,RSF达到了最高的预测性能,测试一致性指数(C-index)为0.885。Kaplan-Meier分析证实,在训练和测试数据集中,基于模型的推荐与提高生存率相关。确定的关键基因组特征包括TTR、MTURN和ETV3,表明它们与治疗反应分层的潜在相关性。与RSF相比,DeepSurv具有较强的预测准确性(C-index = 0.982),但生存曲线分离不明显。结论:我们的研究结果表明,机器学习驱动的生存模型,特别是RSF,可以有效地识别可能受益于ACT的非小细胞肺癌患者。该方法支持数据驱动的个性化化疗决策,有助于推进早期非小细胞肺癌的个性化治疗策略。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Personalized Medicine
Journal of Personalized Medicine Medicine-Medicine (miscellaneous)
CiteScore
4.10
自引率
0.00%
发文量
1878
审稿时长
11 weeks
期刊介绍: Journal of Personalized Medicine (JPM; ISSN 2075-4426) is an international, open access journal aimed at bringing all aspects of personalized medicine to one platform. JPM publishes cutting edge, innovative preclinical and translational scientific research and technologies related to personalized medicine (e.g., pharmacogenomics/proteomics, systems biology). JPM recognizes that personalized medicine—the assessment of genetic, environmental and host factors that cause variability of individuals—is a challenging, transdisciplinary topic that requires discussions from a range of experts. For a comprehensive perspective of personalized medicine, JPM aims to integrate expertise from the molecular and translational sciences, therapeutics and diagnostics, as well as discussions of regulatory, social, ethical and policy aspects. We provide a forum to bring together academic and clinical researchers, biotechnology, diagnostic and pharmaceutical companies, health professionals, regulatory and ethical experts, and government and regulatory authorities.
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