Yuchen Feng, Xuehua Ma, Feiying Ruan, Caihong Mao, Xiaobo Hu
{"title":"Post-modifiable trapezoidal cage and selective recognition of SO<sub>4</sub><sup>2-</sup> from HPO<sub>4</sub><sup>2-</sup>-containing environments.","authors":"Yuchen Feng, Xuehua Ma, Feiying Ruan, Caihong Mao, Xiaobo Hu","doi":"10.1007/s11030-025-11269-5","DOIUrl":null,"url":null,"abstract":"<p><p>Selective recognition of SO<sub>4</sub><sup>2-</sup> from HPO<sub>4</sub><sup>2-</sup>-containing environments is highly challenging, as SO<sub>4</sub><sup>2-</sup> and HPO<sub>4</sub><sup>2-</sup> not only share similar structures and sizes, but also exhibit similarities in many characteristics such as charge density, acidity, and hydration energy. In this contribution, a post-modifiable trapezoidal cage (1a) was developed to address the selective recognition of SO<sub>4</sub><sup>2-</sup> from HPO<sub>4</sub><sup>2-</sup>, as well as to cope with the difficulties of trapezoidal cages in post-modification and property variation. Coupled with the newly explored [4 + 4] cyclization strategy, the synthesis efficiency of producing trapezoidal cages has also been greatly improved. Afterward, by taking advantage of the tetrahedrally deployed binding sites of the trapezoidal cage 1a, selective recognition of SO<sub>4</sub><sup>2-</sup> from HPO<sub>4</sub><sup>2-</sup> can be realized even in complex environments containing many other anions. Through NMR, fluorescence, nonlinear fitting analysis, and HRMS experiments, the binding affinity and binding stoichiometry of 1a + anion were extensively studied. The results demonstrate that 1a + SO<sub>4</sub><sup>2-</sup> follows a 1:1 host-guest binding mode and exhibits a much higher binding affinity (K ~ 1.7 × 10<sup>8</sup> M<sup>-1</sup>) than HPO<sub>4</sub><sup>2-</sup> (K = 2.6 × 10<sup>6</sup> M<sup>-1</sup>) or any other anions (K = 10<sup>4</sup>-10<sup>5</sup> M<sup>-1</sup>) in 5% methanol/chloroform. The selective recognition of SO<sub>4</sub><sup>2-</sup> in complex environments including HPO<sub>4</sub><sup>2-</sup> can provide valuable considerations for the precise design of receptors that can distinguish subtle structural differences in substrates, while the post-modification strategy may also help improve the synthesis and extendibility of other covalent cages.</p>","PeriodicalId":708,"journal":{"name":"Molecular Diversity","volume":" ","pages":""},"PeriodicalIF":3.9000,"publicationDate":"2025-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Molecular Diversity","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1007/s11030-025-11269-5","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, APPLIED","Score":null,"Total":0}
引用次数: 0
Abstract
Selective recognition of SO42- from HPO42--containing environments is highly challenging, as SO42- and HPO42- not only share similar structures and sizes, but also exhibit similarities in many characteristics such as charge density, acidity, and hydration energy. In this contribution, a post-modifiable trapezoidal cage (1a) was developed to address the selective recognition of SO42- from HPO42-, as well as to cope with the difficulties of trapezoidal cages in post-modification and property variation. Coupled with the newly explored [4 + 4] cyclization strategy, the synthesis efficiency of producing trapezoidal cages has also been greatly improved. Afterward, by taking advantage of the tetrahedrally deployed binding sites of the trapezoidal cage 1a, selective recognition of SO42- from HPO42- can be realized even in complex environments containing many other anions. Through NMR, fluorescence, nonlinear fitting analysis, and HRMS experiments, the binding affinity and binding stoichiometry of 1a + anion were extensively studied. The results demonstrate that 1a + SO42- follows a 1:1 host-guest binding mode and exhibits a much higher binding affinity (K ~ 1.7 × 108 M-1) than HPO42- (K = 2.6 × 106 M-1) or any other anions (K = 104-105 M-1) in 5% methanol/chloroform. The selective recognition of SO42- in complex environments including HPO42- can provide valuable considerations for the precise design of receptors that can distinguish subtle structural differences in substrates, while the post-modification strategy may also help improve the synthesis and extendibility of other covalent cages.
期刊介绍:
Molecular Diversity is a new publication forum for the rapid publication of refereed papers dedicated to describing the development, application and theory of molecular diversity and combinatorial chemistry in basic and applied research and drug discovery. The journal publishes both short and full papers, perspectives, news and reviews dealing with all aspects of the generation of molecular diversity, application of diversity for screening against alternative targets of all types (biological, biophysical, technological), analysis of results obtained and their application in various scientific disciplines/approaches including:
combinatorial chemistry and parallel synthesis;
small molecule libraries;
microwave synthesis;
flow synthesis;
fluorous synthesis;
diversity oriented synthesis (DOS);
nanoreactors;
click chemistry;
multiplex technologies;
fragment- and ligand-based design;
structure/function/SAR;
computational chemistry and molecular design;
chemoinformatics;
screening techniques and screening interfaces;
analytical and purification methods;
robotics, automation and miniaturization;
targeted libraries;
display libraries;
peptides and peptoids;
proteins;
oligonucleotides;
carbohydrates;
natural diversity;
new methods of library formulation and deconvolution;
directed evolution, origin of life and recombination;
search techniques, landscapes, random chemistry and more;