The complete chloroplast genome and phylogenetic analysis of Oxytropis kansuensis Bunge (Fabaceae).

IF 0.5 4区 生物学 Q4 GENETICS & HEREDITY
Mitochondrial DNA. Part B, Resources Pub Date : 2025-06-17 eCollection Date: 2025-01-01 DOI:10.1080/23802359.2025.2519213
Dan Lei, Hai-Tao Ma, Qi-Yin Chen, Bei Jiang, Yong-Zeng Zhang
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引用次数: 0

Abstract

Oxytropis kansuensis Bunge holds significant medicinal and ecological values. Nevertheless, the absence of a complete chloroplast genome has impeded our ability to better understand and utilize this plant. In this study, the complete chloroplast genome of O. kansuensis was sequenced and de novo assembled for the first time. The total genome length was determined to be 127,115 bp, with a guanine-cytosine (GC) content of 34.29%. It was observed that the inverted repeat (IR) region was absent in this species. A total of 110 genes were annotated, including 76 PCGs, 30 tRNA genes, and four rRNA genes. A phylogenetic tree was constructed from the complete chloroplast genome sequences of 10 Oxytropis species and seven Astragalus species. The result indicated that Oxytropis and Astragalus clearly form distinct monophyletic lineages, respectively, and O. kansuensis is most closely related to the O. ochrocephala. This research not only enriches the genomic database but also establishes a firm foundation for future studies on O. kansuensis. Furthermore, it offers compelling scientific evidence to advance broader phylogenetic and evolutionary investigations of Oxytropis.

甘肃棘豆属植物叶绿体全基因组及系统发育分析。
甘肃棘豆具有重要的药用价值和生态价值。然而,缺乏完整的叶绿体基因组阻碍了我们更好地了解和利用这种植物的能力。本研究首次对甘肃稻叶绿体全基因组进行了测序和重新组装。基因组全长127,115 bp,鸟胞嘧啶(GC)含量为34.29%。结果表明,该物种不存在IR区。共标注110个基因,其中PCGs 76个,tRNA 30个,rRNA 4个。利用10种棘豆属植物和7种黄芪属植物的叶绿体全基因组序列构建了系统发育树。结果表明,棘豆属植物和黄芪属植物分别具有明显的单系谱系,其中甘肃棘豆属植物与黄头棘豆属植物的亲缘关系最为密切。本研究不仅丰富了甘肃古树的基因组数据库,而且为今后甘肃古树的研究奠定了坚实的基础。此外,它提供了令人信服的科学证据,以推进更广泛的棘足虫的系统发育和进化研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Mitochondrial DNA. Part B, Resources
Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
1.30
自引率
20.00%
发文量
670
期刊介绍: This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.
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