Machine learning short-ranged many-body interactions in colloidal systems using descriptors based on Voronoi cells.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Rinske M Alkemade, Rastko Sknepnek, Frank Smallenburg, Laura Filion
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引用次数: 0

Abstract

Machine learning (ML) strategies are opening the door to faster computer simulations, allowing us to simulate more realistic colloidal systems. Since the interactions in colloidal systems are often highly many-body, stemming from, e.g., depletion and steric interactions, one of the challenges for these algorithms is capturing the many-body nature of these interactions. In this paper, we introduce a new ML-based strategy for fitting many-body interactions in colloidal systems where the many-body interaction is highly local. To this end, we develop Voronoi-based descriptors for capturing the local environment and fit the effective potential using a simple neural network. To test this algorithm, we consider a simple two-dimensional model for a colloid-polymer mixture, where the colloid-colloid interactions and colloid-polymer interactions are hard-disk like, while the polymers themselves interact as ideal gas particles. We find that a Voronoi-based description is sufficient to accurately capture the many-body nature of this system. Moreover, we find that the Pearson correlation function alone is insufficient to determine the predictive power of the network emphasizing the importance of additional metrics when assessing the quality of ML-based potentials.

基于Voronoi细胞的胶体系统描述符的机器学习短程多体相互作用。
机器学习(ML)策略为更快的计算机模拟打开了大门,使我们能够模拟更真实的胶体系统。由于胶体系统中的相互作用通常是高度多体的,例如耗竭和立体相互作用,因此这些算法的挑战之一是捕获这些相互作用的多体性质。本文提出了一种新的基于机器学习的多体相互作用拟合策略,用于多体相互作用高度局域化的胶体系统。为此,我们开发了基于voronoi的描述符,用于捕获局部环境并使用简单的神经网络拟合有效势。为了测试该算法,我们考虑了一个简单的胶体-聚合物混合物的二维模型,其中胶体-胶体相互作用和胶体-聚合物相互作用像硬盘一样,而聚合物本身作为理想气体粒子相互作用。我们发现基于voronoi的描述足以准确地捕捉该系统的多体特性。此外,我们发现单独的Pearson相关函数不足以确定网络的预测能力,强调在评估基于ml的潜力的质量时附加指标的重要性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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