Graphically Defined Model Reactions Are Extensible, Accurate, and Systematically Improvable.

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL
Qiyuan Zhao, Veerupaksh Singla, Hsuan-Hao Hsu, Brett M Savoie
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引用次数: 0

Abstract

Achieving fast and accurate reaction prediction is central to a suite of chemical applications. Nevertheless, classic approaches based on templates or simple models are typically fast but with limited scope or accuracy, while the emerging machine learning-based models are limited in their transferability due to the lack of large reaction databases. Here, we address these limitations by formalizing the model reaction concept based on fixed-depth condensed reaction graphs that are shown to achieve a cost and accuracy balance that is applicable to many problems. The model reaction concept can be utilized to provide reliable predictions of activation energies and transition state geometries for a large range of organic reactions. In addition, using an alkane pyrolysis system as a benchmarking example, we show that the accuracy of the activation energy prediction can be further improved by adding correction terms based on the empirical Brønsted-Evans-Polanyi (BEP) relationship. These successful applications demonstrate that the model reaction can serve as a general tool to reduce the cost associated with ab initio transition state searches.

图形定义的模型反应是可扩展的,准确的,系统的改进。
实现快速和准确的反应预测是核心的一套化学应用。然而,基于模板或简单模型的经典方法通常速度很快,但范围或准确性有限,而新兴的基于机器学习的模型由于缺乏大型反应数据库而在可移植性方面受到限制。在这里,我们通过形式化基于固定深度浓缩反应图的模型反应概念来解决这些限制,这些反应图显示出实现适用于许多问题的成本和准确性平衡。模型反应概念可用于为大范围的有机反应提供活化能和过渡态几何形状的可靠预测。此外,以烷烃热解体系为基准,我们发现在经验Brønsted-Evans-Polanyi (BEP)关系的基础上加入校正项可以进一步提高活化能预测的准确性。这些成功的应用表明,模型反应可以作为一种通用的工具,以减少从头算过渡态搜索相关的成本。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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