Ammonium Organosulfonates as Machine Learning-Driven “Crystallization Cocktails” for the Structure Determination of Liquid Molecules

IF 3.2 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
Anastasia Danshina, Ivan Zlobin, Svetlana Solov’eva, Nikolai Rekut and Yulia V. Nelyubina*, 
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Abstract

A concept of “crystallization cocktails” for crystal structure determination of small (liquid) molecules is introduced, offering a simple one-step procedure of one-pot mixing commercial sulfonic acids (such as p-toluenesulfonic and 1,5-naphtalenedisulfonic) and geometrically diverse amines (such as p-phenylenediamine, 4,4′-oxidianiline, and 4,4′-diamino-3,3′-dichlorodiphenylmethane) in different combinations to cocrystallize with a chosen liquid compound by simple solvent evaporation. These “crystallization cocktails” may adapt to different guests owing to “labile” intermolecular interactions between sulfonate and ammonium ions of diverse geometries and flexibility, as demonstrated by a successful cocrystallization of three model phenol derivatives (2,4-dimethyl-, 2-isopropyl-, and 2-ethylphenol); one of them being characterized by X-ray diffraction for the first time. The guest-to-host ratio in the obtained cocrystals, three of which featured the same ammonium organosulfonate but different phenol guests, was found to depend on the size of the individual components of the “crystallization cocktails”. To get insight into the preferable formation of a cocrystal by some of these “cocktails”─as common (descriptive) crystallographic tools failed to provide a definitive answer─a machine learning (ML) algorithm was developed, which allowed limiting the list of their components to a few most suitable ones for a successful cocrystallization with liquid phenols. “Crystallization cocktails” that can be “mixed to order”─and boosted by the ML─pave the way toward routine structure determination of liquids or other poorly crystallizing substances by X-ray diffraction, streamlining the search for new chemical compounds and identification of “old” ones in natural products, waste and natural waters, and living organisms.

有机磺酸铵作为机器学习驱动的液体分子结构测定的“结晶鸡尾酒”
介绍了用于测定小(液体)分子晶体结构的“结晶鸡尾酒”概念,提供了一种简单的一步程序,即一锅混合商业磺酸(如对甲苯磺酸和1,5-萘二磺酸)和几何上不同的胺(如对苯二胺,4,4 ' -氧化苯胺和4,4 ' -二胺-3,3 ' -二氯二苯甲烷)以不同的组合与选定的液体化合物通过简单的溶剂蒸发共结晶。这些“结晶鸡尾酒”可以适应不同的客人,因为不同几何形状和灵活性的磺酸和铵离子之间的“不稳定”分子间相互作用,正如三种模型苯酚衍生物(2,4-二甲基-,2-异丙基-和2-乙基苯酚)的成功共结晶所证明的那样;其中一种首次被x射线衍射表征。所获得的共晶体中,有三个具有相同的有机磺酸铵但不同的苯酚客人的客人与主人的比例,被发现取决于“结晶鸡尾酒”的单个成分的大小。由于常见的(描述性)晶体学工具未能提供明确的答案,为了深入了解这些“鸡尾酒”中的一些共晶的优选形成,开发了一种机器学习(ML)算法,该算法允许将其成分列表限制为几个最适合与液体苯酚成功共结晶的成分。可以“按需混合”的“结晶鸡尾酒”──并在ML的推动下──为通过x射线衍射对液体或其他结晶性差的物质进行常规结构测定铺平了道路,简化了寻找新化合物和识别天然产物、废物和天然水体以及生物体中的“旧”化合物的过程。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Crystal Growth & Design
Crystal Growth & Design 化学-材料科学:综合
CiteScore
6.30
自引率
10.50%
发文量
650
审稿时长
1.9 months
期刊介绍: The aim of Crystal Growth & Design is to stimulate crossfertilization of knowledge among scientists and engineers working in the fields of crystal growth, crystal engineering, and the industrial application of crystalline materials. Crystal Growth & Design publishes theoretical and experimental studies of the physical, chemical, and biological phenomena and processes related to the design, growth, and application of crystalline materials. Synergistic approaches originating from different disciplines and technologies and integrating the fields of crystal growth, crystal engineering, intermolecular interactions, and industrial application are encouraged.
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