Geometric Guidance Integrated with Directed Electrostatics Strategy within a Graph Neural Network Approach for Nanocluster Structure Prediction.

IF 2.7 2区 化学 Q3 CHEMISTRY, PHYSICAL
The Journal of Physical Chemistry A Pub Date : 2025-06-26 Epub Date: 2025-06-13 DOI:10.1021/acs.jpca.5c02284
Sridatri Nandy, K V Jovan Jose
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引用次数: 0

Abstract

We introduce the Geometric-DESIGNN method, which integrates Geometric Guidance with Directed Electrostatics Strategy within a Graph Neural Network framework to predict the stable configuration of nanoclusters on their potential energy surfaces. This approach merges the geometric and electronic strategies using graph neural network-based models to predict structures of large atomic clusters with specific size and point-group symmetries. This approach aids in constructing atomic metal cluster structures by predicting building frames through a geometric approach and locating the minima in the molecular electrostatic potential (MESP) landscape. By following alternate geometric and DESIGNN building strategies for each shell of parent clusters, we efficiently achieve close-packed daughter structures along their evolutionary paths. The geometric-DESIGNN approach is validated on the prototype Mgn clusters, by building structures for sizes up to n < 561. Furthermore, constraining the point-group symmetry of the parent clusters, we identify new symmetric isomers of medium to large Mgn clusters with n < 150. This methodology is also employed to construct stable Mgn nanoclusters with n = 332, 338, and 561. Benchmarking results show that the geometric-DESIGNN approach is an efficient tool for accelerated prediction of the nanocluster structure.

几何制导与定向静电策略相结合的图神经网络纳米团簇结构预测。
我们引入了几何设计方法,该方法在图形神经网络框架内将几何引导与定向静电策略相结合,以预测纳米团簇在其势能表面上的稳定构型。该方法结合几何和电子策略,使用基于图神经网络的模型来预测具有特定尺寸和点群对称性的大型原子团簇的结构。该方法通过几何方法预测建筑框架,并在分子静电势(MESP)景观中定位最小值,从而有助于构建原子金属簇结构。通过对父簇的每个壳遵循交替的几何和DESIGNN构建策略,我们有效地沿着它们的进化路径实现紧密排列的子结构。几何设计方法通过构建尺寸为n < 561的结构,在原型Mgn集群上进行了验证。此外,在约束母团簇点群对称性的条件下,我们发现了n < 150的中大型Mgn团簇的新的对称异构体。该方法还用于构建n = 332、338和561的稳定Mgn纳米团簇。基准测试结果表明,几何设计方法是加速预测纳米团簇结构的有效工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
The Journal of Physical Chemistry A
The Journal of Physical Chemistry A 化学-物理:原子、分子和化学物理
CiteScore
5.20
自引率
10.30%
发文量
922
审稿时长
1.3 months
期刊介绍: The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
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