{"title":"Chinese Seed Trait Database: a curated resource for diaspore traits in the Chinese flora","authors":"Hao-Yu Wang, Xue-Lin Chen, Si-Chong Chen","doi":"10.1111/nph.70296","DOIUrl":null,"url":null,"abstract":"<h2> Introduction</h2>\n<p>Regeneration marks the beginning of a plant's life cycle, with profound effects on population recruitment, species adaptation, and community resilience to environmental changes (Grubb, <span>1977</span>). Diaspores, including seeds, fruits, and their appendages (hereafter ‘seeds’), are crucial agents of plant regeneration, possessing a wide range of functional traits related to dispersal and colonisation (Saatkamp <i>et al</i>., <span>2019</span>). Trait-based approaches have been widely used to investigate responses of plants to both biotic and abiotic conditions from individual to ecosystem scales (Díaz <i>et al</i>., <span>2016</span>; He <i>et al</i>., <span>2019</span>). To date, traits of vegetative organs are overrepresented in existing global and regional databases, largely due to the essential roles of leaves in ecological functions and ecosystem services as well as the relative ease of accessing and measuring these traits (Supporting Information Table S1). However, our understanding of plant traits remains incomplete, particularly for those traits that are difficult to measure, such as regenerative traits (known as the ‘Raunkiæran shortfall’; Hortal <i>et al</i>., <span>2015</span>). Several databases have made efforts to address this gap (Table S1). For instance, the TRY database has compiled over 50 distinct seed traits with decent species representation (Kattge <i>et al</i>., <span>2020</span>), and the GIFT database has also aggregated substantial seed trait data (Weigelt <i>et al</i>., <span>2020</span>). Some regional databases, such as Rasgos-CL (Alfaro <i>et al</i>., <span>2023</span>) and LEDA (Kleyer <i>et al</i>., <span>2008</span>), with over 20% seed trait records, have contributed to this field. Nevertheless, seed trait data remain relatively sparse both in terms of trait diversity and record coverage (Table S1). Advancing key research questions in plant science necessitates comprehensive seed trait data, along with associated geographic information (Saatkamp <i>et al</i>., <span>2019</span>). These demands have prompted the recent initiation of several databases focusing on seed germination (Fernández-Pascual <i>et al</i>., <span>2023</span>), seed dormancy (Rosbakh <i>et al</i>., <span>2020</span>), and Brazilian rock vegetation seed traits (Ordóñez-Parra <i>et al</i>., <span>2023</span>). Despite these advances, seed-related data lag far behind those centred on vegetative traits in existing databases (Larson & Funk, <span>2016</span>; Kattge <i>et al</i>., <span>2020</span>).</p>\n<p>Current research efforts remain disproportionately focused on specific plant communities or habitats within certain regions, leading to heavily regional biases in the current global coverage of seed traits (Silveira <i>et al</i>., <span>2023</span>). China, which has a wide range of biomes, is renowned for its remarkable floral diversity of over 35 000 vascular plant taxa (Lu & He, <span>2017</span>). For example, the Qinghai-Tibet Plateau, known as the ‘Roof of the World’, harbours at least 12 000 plant species, of which almost 20% are endemic to the region (Wen <i>et al</i>., <span>2014</span>). These abundant resources have enabled a wealth of research by Chinese scholars, establishing China as a growing contributor to the international plant science community. According to the Chinese Science Citation Database, > 1000 authorised journals in science and technology are published in Chinese (http://sdb.csdl.ac.cn; Jin & Wang, <span>1999</span>). However, due to the language barrier and access limitation, this wealth of information remains a rich yet underutilised resource for plant science studies in the international research community (Amano <i>et al</i>., <span>2016</span>). To date, a number of regional databases have emerged, for example, AusTraits summarises data on plant traits in Australia (Falster <i>et al</i>., <span>2021</span>), and FunAndes compiles trait data on major plant taxa in the tropical Andes (Báez <i>et al</i>., <span>2022</span>). Integrating regional databases with global ones can enhance the completeness of trait data and mitigate the geographical biases in global data coverage (Maitner <i>et al</i>., <span>2023</span>). Unfortunately, limited progress has been made in systematically compiling regional data on seeds. Here, we present a curated repository that compiles an extensive array of seed traits for plant species in China – the Chinese Seed Trait Database (hereafter ‘CSTD’; https://macroeologygroup.shinyapps.io/CSTD). Our goal is to address gaps in current plant trait data and to enhance the accessibility of seed trait data to the international research community.</p>","PeriodicalId":214,"journal":{"name":"New Phytologist","volume":"6 1","pages":""},"PeriodicalIF":8.3000,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"New Phytologist","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1111/nph.70296","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0
Abstract
Introduction
Regeneration marks the beginning of a plant's life cycle, with profound effects on population recruitment, species adaptation, and community resilience to environmental changes (Grubb, 1977). Diaspores, including seeds, fruits, and their appendages (hereafter ‘seeds’), are crucial agents of plant regeneration, possessing a wide range of functional traits related to dispersal and colonisation (Saatkamp et al., 2019). Trait-based approaches have been widely used to investigate responses of plants to both biotic and abiotic conditions from individual to ecosystem scales (Díaz et al., 2016; He et al., 2019). To date, traits of vegetative organs are overrepresented in existing global and regional databases, largely due to the essential roles of leaves in ecological functions and ecosystem services as well as the relative ease of accessing and measuring these traits (Supporting Information Table S1). However, our understanding of plant traits remains incomplete, particularly for those traits that are difficult to measure, such as regenerative traits (known as the ‘Raunkiæran shortfall’; Hortal et al., 2015). Several databases have made efforts to address this gap (Table S1). For instance, the TRY database has compiled over 50 distinct seed traits with decent species representation (Kattge et al., 2020), and the GIFT database has also aggregated substantial seed trait data (Weigelt et al., 2020). Some regional databases, such as Rasgos-CL (Alfaro et al., 2023) and LEDA (Kleyer et al., 2008), with over 20% seed trait records, have contributed to this field. Nevertheless, seed trait data remain relatively sparse both in terms of trait diversity and record coverage (Table S1). Advancing key research questions in plant science necessitates comprehensive seed trait data, along with associated geographic information (Saatkamp et al., 2019). These demands have prompted the recent initiation of several databases focusing on seed germination (Fernández-Pascual et al., 2023), seed dormancy (Rosbakh et al., 2020), and Brazilian rock vegetation seed traits (Ordóñez-Parra et al., 2023). Despite these advances, seed-related data lag far behind those centred on vegetative traits in existing databases (Larson & Funk, 2016; Kattge et al., 2020).
Current research efforts remain disproportionately focused on specific plant communities or habitats within certain regions, leading to heavily regional biases in the current global coverage of seed traits (Silveira et al., 2023). China, which has a wide range of biomes, is renowned for its remarkable floral diversity of over 35 000 vascular plant taxa (Lu & He, 2017). For example, the Qinghai-Tibet Plateau, known as the ‘Roof of the World’, harbours at least 12 000 plant species, of which almost 20% are endemic to the region (Wen et al., 2014). These abundant resources have enabled a wealth of research by Chinese scholars, establishing China as a growing contributor to the international plant science community. According to the Chinese Science Citation Database, > 1000 authorised journals in science and technology are published in Chinese (http://sdb.csdl.ac.cn; Jin & Wang, 1999). However, due to the language barrier and access limitation, this wealth of information remains a rich yet underutilised resource for plant science studies in the international research community (Amano et al., 2016). To date, a number of regional databases have emerged, for example, AusTraits summarises data on plant traits in Australia (Falster et al., 2021), and FunAndes compiles trait data on major plant taxa in the tropical Andes (Báez et al., 2022). Integrating regional databases with global ones can enhance the completeness of trait data and mitigate the geographical biases in global data coverage (Maitner et al., 2023). Unfortunately, limited progress has been made in systematically compiling regional data on seeds. Here, we present a curated repository that compiles an extensive array of seed traits for plant species in China – the Chinese Seed Trait Database (hereafter ‘CSTD’; https://macroeologygroup.shinyapps.io/CSTD). Our goal is to address gaps in current plant trait data and to enhance the accessibility of seed trait data to the international research community.
更新标志着植物生命周期的开始,对种群补充、物种适应和群落对环境变化的恢复力具有深远的影响(Grubb, 1977)。隔膜,包括种子、果实及其附属物(以下简称“种子”),是植物再生的重要媒介,具有广泛的与扩散和定植相关的功能性状(Saatkamp等人,2019)。基于性状的方法已被广泛用于研究植物对生物和非生物条件的反应,从个体到生态系统尺度(Díaz等人,2016;He et al., 2019)。迄今为止,在现有的全球和区域数据库中,营养器官的性状被过多地代表,这主要是由于叶片在生态功能和生态系统服务中的重要作用,以及相对容易获取和测量这些性状(支持信息表S1)。然而,我们对植物性状的理解仍然不完整,特别是那些难以测量的性状,如再生性状(称为“Raunkiæran缺陷”;Hortal et al., 2015)。一些数据库已经努力弥补这一差距(表S1)。例如,TRY数据库已经汇编了50多种具有良好物种代表性的不同种子性状(Kattge et al., 2020), GIFT数据库也汇集了大量种子性状数据(Weigelt et al., 2020)。一些区域性数据库,如Rasgos-CL (Alfaro et al., 2023)和LEDA (Kleyer et al., 2008),拥有超过20%的种子性状记录,对该领域做出了贡献。然而,无论是在性状多样性还是记录覆盖率方面,种子性状数据仍然相对较少(表S1)。推进植物科学的关键研究问题需要全面的种子性状数据以及相关的地理信息(Saatkamp等人,2019)。这些需求促使最近启动了几个数据库,重点关注种子萌发(Fernández-Pascual等人,2023)、种子休眠(Rosbakh等人,2020)和巴西岩石植被种子性状(Ordóñez-Parra等人,2023)。尽管取得了这些进步,但与种子相关的数据远远落后于现有数据库中以营养性状为中心的数据(Larson &;恐慌,2016;Kattge et al., 2020)。目前的研究工作仍然不成比例地集中在某些地区的特定植物群落或栖息地,导致目前种子性状的全球覆盖存在严重的区域偏见(Silveira et al., 2023)。中国有着广泛的生物群系,以其超过35000种维管植物类群的植物多样性而闻名(Lu &;他,2017)。例如,被称为“世界屋脊”的青藏高原拥有至少1.2万种植物,其中近20%是该地区特有的(Wen et al., 2014)。这些丰富的资源使中国学者能够进行丰富的研究,使中国成为国际植物科学界日益增长的贡献者。中国科学引文数据库(Chinese Science Citation Database)收录1000种授权科技期刊(http://sdb.csdl.ac.cn;金,王,1999)。然而,由于语言障碍和获取限制,这些丰富的信息仍然是国际研究界植物科学研究的丰富但未充分利用的资源(Amano et al., 2016)。迄今为止,已经出现了许多区域数据库,例如,AusTraits汇总了澳大利亚的植物性状数据(Falster等人,2021),而FunAndes汇编了热带安第斯山脉主要植物分类群的性状数据(Báez等人,2022)。将区域数据库与全球数据库整合可以增强特征数据的完整性,减轻全球数据覆盖的地理偏差(Maitner et al., 2023)。不幸的是,在系统地汇编有关种子的区域数据方面取得的进展有限。在这里,我们提出了一个精心策划的存储库,它汇编了中国植物物种的大量种子性状-中国种子性状数据库(以下简称“CSTD”;https://macroeologygroup.shinyapps.io/CSTD)。我们的目标是解决目前植物性状数据的差距,并提高种子性状数据对国际研究界的可及性。
期刊介绍:
New Phytologist is an international electronic journal published 24 times a year. It is owned by the New Phytologist Foundation, a non-profit-making charitable organization dedicated to promoting plant science. The journal publishes excellent, novel, rigorous, and timely research and scholarship in plant science and its applications. The articles cover topics in five sections: Physiology & Development, Environment, Interaction, Evolution, and Transformative Plant Biotechnology. These sections encompass intracellular processes, global environmental change, and encourage cross-disciplinary approaches. The journal recognizes the use of techniques from molecular and cell biology, functional genomics, modeling, and system-based approaches in plant science. Abstracting and Indexing Information for New Phytologist includes Academic Search, AgBiotech News & Information, Agroforestry Abstracts, Biochemistry & Biophysics Citation Index, Botanical Pesticides, CAB Abstracts®, Environment Index, Global Health, and Plant Breeding Abstracts, and others.