The chromosome-level genome sequences of the freshwater sponge, Spongilla lacustris (Linnaeus, 1759) and the chlorophyte cobiont Choricystis sp., and the associated microbial metagenome sequences.

Q1 Medicine

Wellcome Open Research Pub Date : 2025-04-25 eCollection Date: 2025-01-01 DOI:10.12688/wellcomeopenres.23988.1

Sally P Leys, Ute Hentschel, Graeme Oatley, Elizabeth Sinclair, Eerik Aunin, Noah Gettle, Camilla Santos, Michael Paulini, Dirk Erpenbeck, Haoyu Niu, Victoria McKenna

引用次数: 0

Abstract

We present a genome assembly from an individual Spongilla lacustris (freshwater sponge; Porifera; Demospongiae; Spongillida; Spongillidae). The genome sequence is 248.7 megabases in span. Most of the assembly is scaffolded into 23 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 28.04 kilobases in length. A 14.6-megabase genome assembly of the green algal cobiont Choricystis sp. (Chlorophyta; Trebouxiophyceae) was scaffolded into 16 chromosomal pseudomolecules. Additionally, three bacterial metagenome bins were recovered from the same sample. Gene annotation of this assembly at Ensembl identified 30,435 protein coding genes.

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淡水海绵，海绵湖（Linnaeus, 1759）和绿藻共生体绒毛菌sp.的染色体水平基因组序列及其相关微生物元基因组序列。

我们提出了一个基因组组装从个体海绵湖(淡水海绵；海绵动物;寻常海绵纲;Spongillida;针海绵科)。基因组序列全长248.7兆碱基。大部分的组装被搭建成23个染色体假分子。线粒体基因组也已组装完毕，长度为28.04千碱基。绿藻共生体Choricystis sp.(绿藻门；将Trebouxiophyceae)支架合成16个染色体假分子。此外，从同一样本中回收了三个细菌宏基因组箱。该组合在Ensembl上的基因注释鉴定出30435个蛋白质编码基因。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

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来源期刊

Wellcome Open Research Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)

CiteScore

5.50

自引率

0.00%

发文量

426

审稿时长

1 weeks

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