Bridging data silos to holistically model plant macrophenology.

IF 9.4 1区 生物学 Q1 Agricultural and Biological Sciences
New Phytologist Pub Date : 2025-06-06 DOI:10.1111/nph.70249
Lizbeth G Amador, Tadeo H Ramirez-Parada, Isaac W Park, Susan J Mazer, Aaron M Ellison, Margaret O'Brien, Eric R Sokol, Colin A Smith, Charles C Davis, Sydne Record
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引用次数: 0

Abstract

Phenological response to global climate change can impact ecosystem functions. There are various data sources from which spatiotemporal and taxonomic phenological data may be obtained: mobilized herbaria, community science initiatives, observatory networks, and remote sensing. However, analyses conducted to date have generally relied on single sources of these data. Siloed treatment of data in analyses may be due to the lack of harmonization across different data sources that offer partially nonoverlapping information and are often complementary. Such treatment precludes a deeper understanding of phenological responses at varying macroecological scales. Here, we describe a detailed vision for the harmonization of phenological data, including the direct integration of disparate sources of phenological data using a common schema. Specifically, we highlight existing methods for data harmonization that can be applied to phenological data: data design patterns, metadata standards, and ontologies. We describe how harmonized data from multiple sources can be integrated into analyses using existing methods and discuss the use of automated extraction techniques. Data harmonization is not a new concept in ecology, but the harmonization of phenological data is overdue. We aim to highlight the need for better data harmonization, providing a roadmap for how harmonized phenological data may fill gaps while simultaneously being integrated into analyses.

弥合数据孤岛,全面模拟植物宏观物候。
对全球气候变化的物候响应会影响生态系统功能。时空和分类学物候数据可以通过多种数据来源获得:动员的植物标本馆、社区科学倡议、观测站网络和遥感。然而,迄今为止进行的分析通常依赖于这些数据的单一来源。分析中数据的孤立处理可能是由于不同数据源之间缺乏协调,这些数据源提供部分不重叠的信息,并且通常是互补的。这种处理妨碍了对不同宏观生态尺度上物候反应的更深入理解。在这里,我们描述了物候数据协调的详细愿景,包括使用公共模式直接集成不同来源的物候数据。具体来说,我们强调了可以应用于物候数据的现有数据协调方法:数据设计模式、元数据标准和本体。我们描述了如何使用现有方法将来自多个来源的协调数据集成到分析中,并讨论了自动提取技术的使用。数据协调在生态学中并不是一个新概念,但物候数据的协调却姗姗来迟。我们的目标是强调对更好的数据协调的需求,为协调物候数据如何填补空白提供路线图,同时将其集成到分析中。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
New Phytologist
New Phytologist PLANT SCIENCES-
CiteScore
17.60
自引率
5.30%
发文量
728
审稿时长
1 months
期刊介绍: New Phytologist is a leading publication that showcases exceptional and groundbreaking research in plant science and its practical applications. With a focus on five distinct sections - Physiology & Development, Environment, Interaction, Evolution, and Transformative Plant Biotechnology - the journal covers a wide array of topics ranging from cellular processes to the impact of global environmental changes. We encourage the use of interdisciplinary approaches, and our content is structured to reflect this. Our journal acknowledges the diverse techniques employed in plant science, including molecular and cell biology, functional genomics, modeling, and system-based approaches, across various subfields.
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