Joel Johnson George, Sierra H Ball, Elena Wang, Remy T Schneider, Claudia Capdevila, Francesca Martini, Hyeonjeong Lee, Jonathan Miller, Liang Cheng, John W Murray, Hans-Willem Snoeck, Kelley S Yan
{"title":"Rapid and efficient protocol for optical clearing of mouse intestinal tissues for enhanced fluorescence imaging and 3D reconstruction.","authors":"Joel Johnson George, Sierra H Ball, Elena Wang, Remy T Schneider, Claudia Capdevila, Francesca Martini, Hyeonjeong Lee, Jonathan Miller, Liang Cheng, John W Murray, Hans-Willem Snoeck, Kelley S Yan","doi":"10.1016/j.xpro.2025.103841","DOIUrl":null,"url":null,"abstract":"<p><p>Histological analysis of intestinal epithelial tissues is enhanced by 3D visualization compared to 2D sections. Here, we present a protocol for 3D visualization of intestinal epithelial cells using an optical clearing approach optimized for endogenous fluorescence and preservation of crypt-villus morphology. We describe steps for clearing and refractive index matching tissue. We provide detailed procedures for imaging and reconstructing tissue to visualize epithelial cells along the crypt-villus axis with high resolution. We illustrate this approach with endogenous tdTomato used for lineage tracing in the small intestine of Fgfbp1-CreER<sup>T2</sup>; Rosa26-tdTomato mice. For complete details on the use and execution of this protocol, please refer to Capdevila et al.<sup>1</sup>.</p>","PeriodicalId":34214,"journal":{"name":"STAR Protocols","volume":"6 2","pages":"103841"},"PeriodicalIF":1.3000,"publicationDate":"2025-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"STAR Protocols","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1016/j.xpro.2025.103841","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0
Abstract
Histological analysis of intestinal epithelial tissues is enhanced by 3D visualization compared to 2D sections. Here, we present a protocol for 3D visualization of intestinal epithelial cells using an optical clearing approach optimized for endogenous fluorescence and preservation of crypt-villus morphology. We describe steps for clearing and refractive index matching tissue. We provide detailed procedures for imaging and reconstructing tissue to visualize epithelial cells along the crypt-villus axis with high resolution. We illustrate this approach with endogenous tdTomato used for lineage tracing in the small intestine of Fgfbp1-CreERT2; Rosa26-tdTomato mice. For complete details on the use and execution of this protocol, please refer to Capdevila et al.1.