Molecular choreography of sludge extracellular polymeric substances-From biomolecule identification to energetics and assembly dynamics.

IF 2.2 Q2 MULTIDISCIPLINARY SCIENCES
PNAS nexus Pub Date : 2025-05-17 eCollection Date: 2025-05-01 DOI:10.1093/pnasnexus/pgaf157
Sainan Peng, Zhiyue Wang, Jing Ai, Lanfeng Li, Hao Zhou, Yu Zhang, Guiying Liao, Dongsheng Wang, Bing-Jie Ni, Guo-Ping Sheng, Chengzhi Hu, Weijun Zhang
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Abstract

Extracellular polymeric substances (EPS) shape the immediate environment for microbial survival and biofilm formation. Dynamic agglomeration of EPS dominates the formation kinetics and structural properties of activated sludge flocs as a consequence of biopolymer interactions across the wastewater treatment process. Current partial understanding and imprecise modeling of the structure hinder the comprehensive elucidation of the dynamic reorganization of clusters as component interactions change, causing a gap in the fundamental knowledge of EPS generation and functions. Here, biopolymer models of aerobic activated sludge and anaerobic digestion sludge (ADS) were constructed through molecular screening, and the dynamic landscape of EPS multicomponent clusters was then captured by an extensive set of molecular dynamics simulations. Biopolymer chains are assembled hierarchically driven by interactions between polar functional groups and stabilized by hydrogen bonding and van der Waals forces after several substates to obtain the final conformation. Electrostatic repulsion induced by carboxylic groups causes the rugged energy landscape of the process. Biopolymer molecular arrangement governed by polar interactions determines the nonuniform distribution of functional groups and characteristic regions, resulting in the microscopic heterogeneity of EPS clusters. The structure of alpha-helices enhances protein aggregation efficacy by facilitating more polar interactions compared with other residues. Meanwhile, the flexible branched structure and amphiphilic unit improve the energetic contribution of polysaccharides to EPS structural stabilization. Higher humic substance and carboxyl groups content primarily weaken the structural strength of ADS EPS. In general, this study proposes a powerful approach for investigating the molecular choreography within EPS, utilizing atomic simulations based on solved structures to explore the contribution of specific biopolymer features to structural energetics, providing theoretical insights to guide EPS-engineered regulation in wastewater treatment processes.

污泥胞外聚合物质的分子编舞——从生物分子鉴定到能量学和组装动力学。
细胞外聚合物质(EPS)塑造了微生物生存和生物膜形成的直接环境。由于生物聚合物在废水处理过程中的相互作用,EPS的动态团聚主导了活性污泥絮凝体的形成动力学和结构特性。目前对EPS结构的片面理解和不精确的建模阻碍了对组分相互作用变化时簇的动态重组的全面阐明,造成了对EPS生成和功能的基础知识的空白。本研究通过分子筛选构建了好氧活性污泥和厌氧消化污泥(ADS)的生物聚合物模型,并通过广泛的分子动力学模拟捕捉了EPS多组分簇的动态景观。生物聚合物链由极性官能团之间的相互作用驱动分层组装,并在几个亚态后通过氢键和范德华力稳定以获得最终构象。由羧基引起的静电斥力引起了该过程中崎岖的能量景观。受极性相互作用支配的生物聚合物分子排列决定了官能团和特征区分布的不均匀性,导致EPS簇的微观异质性。与其他残基相比,α -螺旋的结构通过促进更多的极性相互作用来提高蛋白质的聚集效率。同时,柔性分支结构和两亲性单元提高了多糖对EPS结构稳定的能量贡献。较高的腐殖质和羧基含量主要削弱了ADS EPS的结构强度。总的来说,本研究提出了一种强有力的方法来研究EPS内部的分子舞蹈,利用基于已解结构的原子模拟来探索特定生物聚合物特征对结构能量学的贡献,为指导废水处理过程中的EPS工程调节提供理论见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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CiteScore
1.80
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