BGMP: a comprehensive database of human blood group gene mutations and phenotypes.

IF 2.6 3区 医学 Q1 MEDICINE, GENERAL & INTERNAL
Chengyan Gao, Wenqian Yu, Can Lou, Hang Lei, Shenglin Huang, Xuefeng Wang, Jiaming Li, Xiaohong Cai
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引用次数: 0

Abstract

The BGMP Database (http://bloodgmp.org) serves as a centralized genomic resource for the comprehensive characterization of human blood group systems. Developed to address critical gaps in existing repositories, this platform advances precision in transfusion medicine and compatibility research by integrating classical blood group data with understudied antigen systems, including human neutrophil antigen (HNA), platelet antigens (including human platelet antigens (HPA) and CD36 variants), and immunoglobulin (Ig) allotypes. BGMP consolidates curated data encompassing 47 erythrocyte blood group systems (54 related genes) with phenotype-frequency correlations, 5 human neutrophil antigen (HNA) systems with 25 characterized epitopes, 41 HPA across 7 glycoprotein targets, CD36 deficiency variants (99 mutation profiles), and 3 immunoglobulin allotype systems with 70 serum protein polymorphisms. The database provides tools for allele variant mapping and data visualization. A dedicated submission portal enables researchers to contribute novel allele sequences or population frequency data, which undergo dual validation through automated pipeline checks and manual curation prior to integration. The current release (Version 1.0, 2025) aggregates 2785 annotated variants across all blood group systems, providing a comprehensive resource that supports clinical transfusion practices and advances blood compatibility research.

BGMP:人类血型基因突变和表型的综合数据库。
BGMP数据库(http://bloodgmp.org)是一个集中的基因组资源,用于全面表征人类血型系统。该平台旨在解决现有知识库的关键空白,通过将经典血型数据与未充分研究的抗原系统(包括人中性粒细胞抗原(HNA)、血小板抗原(包括人血小板抗原(HPA)和CD36变体)和免疫球蛋白(Ig)同种异型)相结合,提高输血医学和相容性研究的准确性。BGMP整合了包括47个具有表型-频率相关性的红细胞血型系统(54个相关基因)、5个具有25个特征表位的人中性粒细胞抗原(HNA)系统、41个跨越7个糖蛋白靶点的HPA、CD36缺陷变体(99个突变谱)和3个具有70个血清蛋白多态性的免疫球蛋白异型系统的整理数据。该数据库为等位基因变异映射和数据可视化提供了工具。专门的提交门户使研究人员能够提供新的等位基因序列或种群频率数据,这些数据在集成之前通过自动管道检查和手动管理进行双重验证。当前版本(版本1.0,2025)汇总了所有血型系统中的2785个带注释的变体,提供了支持临床输血实践和推进血液相容性研究的综合资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
CiteScore
6.50
自引率
6.20%
发文量
381
审稿时长
57 days
期刊介绍: Journal of the Formosan Medical Association (JFMA), published continuously since 1902, is an open access international general medical journal of the Formosan Medical Association based in Taipei, Taiwan. It is indexed in Current Contents/ Clinical Medicine, Medline, ciSearch, CAB Abstracts, Embase, SIIC Data Bases, Research Alert, BIOSIS, Biological Abstracts, Scopus and ScienceDirect. As a general medical journal, research related to clinical practice and research in all fields of medicine and related disciplines are considered for publication. Article types considered include perspectives, reviews, original papers, case reports, brief communications, correspondence and letters to the editor.
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