Risk–reward trade-off during carbon starvation generates dichotomy in motility endurance among marine bacteria

IF 20.5 1区 生物学 Q1 MICROBIOLOGY
Johannes M. Keegstra, Zachary C. Landry, Sophie T. Zweifel, Benjamin R. K. Roller, Dieter A. Baumgartner, Francesco Carrara, Clara Martínez-Pérez, Estelle E. Clerc, Martin Ackermann, Roman Stocker
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Abstract

Copiotrophic marine bacteria contribute to the control of carbon storage in the ocean by remineralizing organic matter. Motility presents copiotrophs with a risk–reward trade-off: it is highly beneficial in seeking out sparse nutrient hotspots, but energetically costly. Here we studied the motility endurance of 26 marine isolates, representing 18 species, using video microscopy and cell tracking over 2 days of carbon starvation. We found that the trade-off results in a dichotomy among marine bacteria, in which risk-averse copiotrophs ceased motility within hours (‘limostatic’), whereas risk-prone copiotrophs converted ~9% of their biomass per day into energy to retain motility for the 2 days of observation (‘limokinetic’). Using machine learning classifiers, we identified a genomic component associated with both strategies, sufficiently robust to predict the response of additional species with 86% accuracy. This dichotomy can help predict the prevalence of foraging strategies in marine microbes and inform models of ocean carbon cycles.

Abstract Image

碳饥饿过程中的风险-回报权衡产生了海洋细菌运动耐力的二分法
海洋共生细菌通过再矿化有机物来控制海洋中的碳储存。运动给共养动物带来了一种风险-回报的权衡:它在寻找稀疏的营养热点方面非常有益,但在能量上代价高昂。利用视频显微镜和细胞跟踪技术,研究了26个海洋分离菌(18种)在2天的碳饥饿条件下的运动耐力。我们发现这种权衡导致了海洋细菌之间的两分法,其中风险厌恶型共养菌在数小时内停止运动(“空气静止”),而风险倾向型共养菌每天将约9%的生物量转化为能量,以保持2天的观察(“空气静止”)。使用机器学习分类器,我们确定了与这两种策略相关的基因组成分,足够稳健,以86%的准确率预测其他物种的反应。这种二分法可以帮助预测海洋微生物觅食策略的普遍性,并为海洋碳循环模型提供信息。
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来源期刊
Nature Microbiology
Nature Microbiology Immunology and Microbiology-Microbiology
CiteScore
44.40
自引率
1.10%
发文量
226
期刊介绍: Nature Microbiology aims to cover a comprehensive range of topics related to microorganisms. This includes: Evolution: The journal is interested in exploring the evolutionary aspects of microorganisms. This may include research on their genetic diversity, adaptation, and speciation over time. Physiology and cell biology: Nature Microbiology seeks to understand the functions and characteristics of microorganisms at the cellular and physiological levels. This may involve studying their metabolism, growth patterns, and cellular processes. Interactions: The journal focuses on the interactions microorganisms have with each other, as well as their interactions with hosts or the environment. This encompasses investigations into microbial communities, symbiotic relationships, and microbial responses to different environments. Societal significance: Nature Microbiology recognizes the societal impact of microorganisms and welcomes studies that explore their practical applications. This may include research on microbial diseases, biotechnology, or environmental remediation. In summary, Nature Microbiology is interested in research related to the evolution, physiology and cell biology of microorganisms, their interactions, and their societal relevance.
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