Oxidative Stress-Related Targets POR and MAPK13 Elucidated for Sarcoidosis Therapy Through Multiomics Analysis

IF 2.4 4区 医学 Q2 MEDICINE, GENERAL & INTERNAL
Xun Yang, Hao Jiang, Xiaoyun Li
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引用次数: 0

Abstract

Purpose: We aimed to identify potential plasma protein targets genetically associated with oxidative stress genes in sarcoidosis.

Methods: We performed summary data-based Mendelian randomization (SMR) analyses using summary statistics from the FinnGen cohorts and multiomics data on quantitative trait loci (QTLs) linked to oxidative stress genes at protein, RNA, and methylation levels. We validated the findings with two independent datasets from published studies. Bayesian colocalization analysis confirmed shared genetic bases and excluded pleiotropy. We also identified relevant plasma regulatory transcription factors (TFs) and constructed protein–protein interaction (PPI) networks. In addition, molecular docking was conducted for drug ligand-protein binding assays.

Results: MAPK13 and POR were identified as significant in proteome-wide SMR, transcriptome-wide SMR, and methylation-wide SMR analyses. These findings were validated through Bayesian colocalization and confirmed in two additional sarcoidosis cohorts. In PSMR analysis, the A allele of rs10447396 near MAPK13 (p38δ) (p = 0.0068 and β = 0.6009) and the A allele of rs59882870 at POR (p = 0.0006 and β = 0.3924) were associated with increased sarcoidosis risk. NFATC3 and NFKB1 were identified as common TFs influencing MAPK13 and POR expression in plasma. Molecular docking identified two potential MAPK13-targeting drugs, ilorasertib and SNS-314, both showing strong affinities for MAPK13.

Conclusion: This study is the first to identify MAPK13 and POR as potential drug targets for sarcoidosis. In addition, molecular docking preliminarily identified potential therapeutic compounds targeting these proteins, suggesting avenues for future experimental validation and the potential development of targeted therapies.

Abstract Image

通过多组学分析,氧化应激相关靶点POR和MAPK13在结节病治疗中被阐明
目的:我们旨在确定结节病中与氧化应激基因相关的潜在血浆蛋白靶点。方法:我们利用FinnGen队列的汇总统计数据和多组学数据,对蛋白质、RNA和甲基化水平上与氧化应激基因相关的数量性状位点(qtl)进行了基于孟德尔随机化(SMR)的汇总数据分析。我们用来自已发表研究的两个独立数据集验证了这些发现。贝叶斯共定位分析证实了共同的遗传基础,排除了多效性。我们还确定了相关的血浆调节转录因子(TFs),并构建了蛋白-蛋白相互作用(PPI)网络。此外,还进行了药物配体-蛋白结合分析的分子对接。结果:MAPK13和POR在蛋白质组范围内的SMR、转录组范围内的SMR和甲基化范围内的SMR分析中被鉴定为显著的。这些发现通过贝叶斯共定位得到验证,并在另外两个结节病队列中得到证实。在PSMR分析中,MAPK13附近rs10447396的A等位基因(p38δ) (p = 0.0068, β = 0.6009)和POR处rss59882870的A等位基因(p = 0.0006, β = 0.3924)与结节病风险增加相关。NFATC3和NFKB1是影响血浆中MAPK13和POR表达的常见tf。分子对接发现了两种潜在的靶向MAPK13的药物ilorasertib和SNS-314,它们都对MAPK13具有很强的亲和力。结论:本研究首次确定了MAPK13和POR作为结节病的潜在药物靶点。此外,分子对接初步确定了靶向这些蛋白的潜在治疗化合物,为未来的实验验证和靶向治疗的潜在发展提供了途径。
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来源期刊
CiteScore
5.30
自引率
0.00%
发文量
274
审稿时长
3-8 weeks
期刊介绍: IJCP is a general medical journal. IJCP gives special priority to work that has international appeal. IJCP publishes: Editorials. IJCP Editorials are commissioned. [Peer reviewed at the editor''s discretion] Perspectives. Most IJCP Perspectives are commissioned. Example. [Peer reviewed at the editor''s discretion] Study design and interpretation. Example. [Always peer reviewed] Original data from clinical investigations. In particular: Primary research papers from RCTs, observational studies, epidemiological studies; pre-specified sub-analyses; pooled analyses. [Always peer reviewed] Meta-analyses. [Always peer reviewed] Systematic reviews. From October 2009, special priority will be given to systematic reviews. [Always peer reviewed] Non-systematic/narrative reviews. From October 2009, reviews that are not systematic will be considered only if they include a discrete Methods section that must explicitly describe the authors'' approach. Special priority will, however, be given to systematic reviews. [Always peer reviewed] ''How to…'' papers. Example. [Always peer reviewed] Consensus statements. [Always peer reviewed] Short reports. [Always peer reviewed] Letters. [Peer reviewed at the editor''s discretion] International scope IJCP publishes work from investigators globally. Around 30% of IJCP articles list an author from the UK. Around 30% of IJCP articles list an author from the USA or Canada. Around 45% of IJCP articles list an author from a European country that is not the UK. Around 15% of articles published in IJCP list an author from a country in the Asia-Pacific region.
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